Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 764 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 735 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 718 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 612 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 313 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 304 / 3e-93 Leucine-rich repeat (LRR) family protein (.1) AT1G55610 264 / 1e-73 BRL1 BRI1 like (.1.2) AT1G06840 261 / 2e-73 Leucine-rich repeat protein kinase family protein (.1) AT3G13380 258 / 1e-71 BRL3 BRI1-like 3 (.1) AT3G24550 249 / 2e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231300 [exp] 1540 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 1534 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 1506 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 1494 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 1018 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 983 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 941 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 828 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 779 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 912 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 816 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 376 / 8e-121 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 373 / 3e-114 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 374 / 5e-114 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 369 / 3e-112 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 350 / 8e-106 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 321 / 9e-101 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 321 / 9e-99 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 315 / 9e-93 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G231600.1 pacid=42796697 polypeptide=Potri.004G231600.1.p locus=Potri.004G231600 ID=Potri.004G231600.1.v4.1 annot-version=v4.1 ATGTGTCCCAAAGTTCTCACGTTTTTGCTGGTTGCTTCCTTTCAGATTTATACAGAGACCTATGGTGATGATTTTACAGTAATGAGTATTCTCAAGGATG CCTGGCAAAACACACCACGTAATTGGGTGGGTGCAGATCCCTGTGGAGGCAAATGGGAAGGCATTTCATGTTACAATTCACGTGTGACTTCGATAACGTT GGCAGCTGTGGGATTGACGGGTGAGCTGTCTGGAGACATCTCCTCCTTATCAGAATTGGAGGTTCTGGATCTATCGTACAACACGGGTTTGAGCGGTACA CTTCCGGCATCAATTGTGAATTTGAAGAAGCTAAAAAACTTAAAGTTGGTTGGTTGTAGTTTCTATGGCCCTATCCCTGAGTTGATAGGGTCTCTTCAGC TGCTGGAGTCTCTAGACCTGAATTCTAATAGATTCACTGGACCAATTCCACATTCAATTGGAAACCTTTCGAAACTCTTTCTGCTGGATCTATCTAATAA TATGCTCGATGGAGCCATCCCTGTCTCCAGTGGAACTACATCTGGTCTTGATATGCTAGTTAATGCAAACCACTTTCATCTAGGAGGGAATCAGCTCTCA GGCACAATCCCGAAAGAGCTTTTCAGATCAAACATGACTCTCATTCATGTGCTTTTGCATGACAATAATCTCACGGGAAGCATTCCTTCTACCCTTGGAC TTGTGCAGACTTTGGAGGCTGTACGTTTTGAAGGGAATTCATTAACTGGACCTGTCCCTCCAAACCTCAACAATCTTACCACTGTGAAGACGTTGATTTT GTCCAACAATAAATTTACTGGGCCTGTTCCTAATCTCACTGGCATGGCTTATCTCAGCTACTTGGACCTGAGCAATAATATTTTTGACGCTTCAGATTTT CCGTCGTCATTCTCAAACTTACGGGCTTTGACAACACTAATGATGGAAAACACTGGACTTGAAGGTCCGATTCCTCCTACCCTCTTCGATCTTCCTAGTT TACAGACTTTGATTCTAAGGAACAACCAGCTCAATGGCACATTGGATATTGCAAGAAGCTCTAGCAGCCAGCGGGAAGCCATTGATATGCGAAACAATCT CATTTCATCCTATTCAGAAACACCAGAACAGAGGAATAACGTGGATGTAATACTTGTGGGTAACCCAGTTTGTGAGCGTACAGAAGCAACAGAACATTAC TGCACAGTTCATCAAGCCATTTCTTCGTTTCTCCTCCCCTGCACTTCAGATCAGATTTCCAGTCCCAACAGCAAATTCTCTTATCCGTACACAGGAGTAC TCTTCTTCAGACCTCCATTTTTAGAGTCAAGAAACGCAACTTATTATCAACGTCCGGTAGAAGAGTCTCTGATGCGTTCCTTTAAGAACTCTAGCCTTCC TGTGGATTCAGTTTATGTAAATTGTCCAACAAATGATTCGTTGGGGAATCTTGAATCGAACGTATCTGTGTTTCCTTCGGGCCAAAATCACTTTAACACA ACTACGATTTCTAAAATTGGATTTGTGCTAAACCGTCAGACTATTGAAAATCCAGATATCTTTGGACCTTCACAATTTAAGGGTGCTGCATACCCATACT TCGATGGAAACCCCACGGAATCAAACAAGTTATCAATCATTGGAAGTATCATTGGGGCTGCGGCTGGAGGAGCCTCTTTCCTGCTAATATTGCTTCTTGC AGGGGTATATGCTTATCGTCAGAAAAAAAGCAGAGAAAGAGCAAGTAAACATAAGAATCATTTTGCATACTTGGATTTAAAGAACAGTGACAGAGTTCCT CAGTTGAAGGGAGCCAGATGCTTCTCTTTCGATGAGATTACGAAGAGCACCAATAATTTCTCGGAAGCCAATCATATTGGATCAGGGGGTTACGGAATGG TTTATAGAGGGATGCTTCGTACTGGACAACTGATTGCCATCAAACGATGTCGACAAGGATCGGTGCAAGGTGGGCTTGAATTCAACGCAGAGATAGAAGT TTTATCGAGAGTTCATCATAAAAATGTTGTAAACCTTGTTGGGTTTTGCTTTGAGAGAGGTGAACAGATGCTAATTTATGAGTTTGTTCGCAATGGTAGT CTCAGGGACAGCCTATCAGGTTTGAGCGGGATCTGGCTGGATTGGAGGAGGAGACTTAAAGTGGCTCTTGATGCAGCAAGAGGTCTTGCCTACTTGCACG AGCTTGTCAACCCTCGTATTATCCACAGGGACGTAAAATCAGCTAACATATTACTGGATGAATGCTTAAATGCTAAAGTTGGTGATTTTGGTCTTTCCAA GCCTATGGACAATAGTGAGCTTATTCTTGCTAGCACTCAAGTTAAAGGGACAATGGGTTATATAGATCCAGAATATCAGGAGACCCTGCTCTTGACTGAG AAGAGTGATGTCTATGGCTTTGGAGTTGTGTTGCTGGAACTAGTAAGTGGAAGAAAGCCTTTAGAGCGAGGGAAATACCTTGTAGCGGAGGTAAGTAGGT CATTGGATAGAAAAAAAGATCTATATAGCCTTCATGAACTTCTTGACCCAAGCATTGGTTTAGACACGAAGCCGAAAGGTCTAGATAAGATAGTGGATCT GGCAATGAAATGTGTACAAGAGAAAGGAAGTGACAGGCCAACAATGGGTGAAGTGGTGAAAGAGATTGAGAATATCTTGCATCTTGCTGGTTTAAACCCC AATGCTGAAGCAGAATCCACTTCAGCTAGTTTTGAGGAAGCAAGCCAGGACGAGTTTCCACCATCCTTGAAGGAAGAAGAGCTTTCATTATCTTGA
AA sequence Show only first row Show all	>Potri.004G231600.1 pacid=42796697 polypeptide=Potri.004G231600.1.p locus=Potri.004G231600 ID=Potri.004G231600.1.v4.1 annot-version=v4.1 MCPKVLTFLLVASFQIYTETYGDDFTVMSILKDAWQNTPRNWVGADPCGGKWEGISCYNSRVTSITLAAVGLTGELSGDISSLSELEVLDLSYNTGLSGT LPASIVNLKKLKNLKLVGCSFYGPIPELIGSLQLLESLDLNSNRFTGPIPHSIGNLSKLFLLDLSNNMLDGAIPVSSGTTSGLDMLVNANHFHLGGNQLS GTIPKELFRSNMTLIHVLLHDNNLTGSIPSTLGLVQTLEAVRFEGNSLTGPVPPNLNNLTTVKTLILSNNKFTGPVPNLTGMAYLSYLDLSNNIFDASDF PSSFSNLRALTTLMMENTGLEGPIPPTLFDLPSLQTLILRNNQLNGTLDIARSSSSQREAIDMRNNLISSYSETPEQRNNVDVILVGNPVCERTEATEHY CTVHQAISSFLLPCTSDQISSPNSKFSYPYTGVLFFRPPFLESRNATYYQRPVEESLMRSFKNSSLPVDSVYVNCPTNDSLGNLESNVSVFPSGQNHFNT TTISKIGFVLNRQTIENPDIFGPSQFKGAAYPYFDGNPTESNKLSIIGSIIGAAAGGASFLLILLLAGVYAYRQKKSRERASKHKNHFAYLDLKNSDRVP QLKGARCFSFDEITKSTNNFSEANHIGSGGYGMVYRGMLRTGQLIAIKRCRQGSVQGGLEFNAEIEVLSRVHHKNVVNLVGFCFERGEQMLIYEFVRNGS LRDSLSGLSGIWLDWRRRLKVALDAARGLAYLHELVNPRIIHRDVKSANILLDECLNAKVGDFGLSKPMDNSELILASTQVKGTMGYIDPEYQETLLLTE KSDVYGFGVVLLELVSGRKPLERGKYLVAEVSRSLDRKKDLYSLHELLDPSIGLDTKPKGLDKIVDLAMKCVQEKGSDRPTMGEVVKEIENILHLAGLNP NAEAESTSASFEEASQDEFPPSLKEEELSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231600 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231300 [exp]	1.41	0.9419
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232301 [exp]	3.00	0.9289
AT1G50110			D-aminoacid aminotransferase-l...		Potri.009G082600 [exp]	3.31	0.8574
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	5.65	0.8863
AT1G79620			Leucine-rich repeat protein ki...		Potri.004G231551 [exp]	7.48	0.8641
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231525 [exp]	9.48	0.8765
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.013G087000 [exp]	12.96	0.8361	PIN9.2
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	13.78	0.8401	Pt-CYTGS.5
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	14.69	0.8519
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120280 [exp]	14.96	0.8455

Compare expression of checked genes

Potri.004G231600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.