Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 1030 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 942 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 938 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 804 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 503 / 3e-163 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 397 / 7e-125 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 385 / 9e-124 Leucine-rich repeat (LRR) family protein (.1) AT5G01950 397 / 6e-123 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 319 / 3e-94 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 284 / 7e-84 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232400 [exp] 1713 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 1640 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 1088 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 1075 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 1061 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 1057 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 1013 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 1002 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 969 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 1225 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 1117 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 482 / 8e-155 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 455 / 1e-150 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 469 / 8e-150 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 454 / 3e-144 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 413 / 2e-133 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 407 / 1e-126 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 388 / 6e-126 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 375 / 9e-115 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G231700.1 pacid=42794677 polypeptide=Potri.004G231700.1.p locus=Potri.004G231700 ID=Potri.004G231700.1.v4.1 annot-version=v4.1 ATGGGTTCAAGAATTCTTGTGTTCTTGGTTGTTGCTCTAATTCAAGTTTGTACCACCACACCAGCAGTGACTAACAATGATGATTTTAATGCACTGAAAG CTCTCAAGGATGTCTGGGATAACGTACCACCAACATGGGTGGGGGCTGACCCTTGTGGTAGCAGGTGGGATGGCATTGTGTGCACCAATTCGCGTGTGAC TTCCATAACATTGGCAAGCATGGGATTGAAAGGAACACTGTCTGGAGACATCTCACTCTTGTCAGAATTGCAGATTCTGGATTTATCCTACAACACAGAA TTGACTGGCTCTCTTCCTCTAGCAATTGGGGATTTGAAGAAGCTAACAAACTTAATACTGGTTCGCTGTCGTTTCTCTGGTCCTATCCCCGATGCAATAG GATCTTTGTCACAGCTAACCGATCTATCTCTCAATTCGAATCGCTTCAGTGGATCAATTCCCCCGTCACTTGGCAATCTAGATAAACTTTTTTGGCTGGA TCTTGCTGATAACATGCTTACTGGGACCATCCCAGTTTCTACAGGCACTACTCCTGGCCTTGACCTACTAGTTCATACAAAACACTTTCATCTTGGATTT AATCAGCTCACAGGCCAAATCCCGCCTAAACTTTTTAGCTCAGGGATGAATCTCATACATGTACTTCTTGAGAGCAACAAGCTGACAGGCAGCATTCCTT CCACCCTTGGCCTTGTGAAGTCTTTGGAGGTTGTGCGTCTTGATAATAATTCGCTCACTGGACCTGTTCCTTCAAACATCAATAATCTTACCAGTGTCAG TGAGATGTTTTTATCCAACAATGGCTTAACTGGGCCACTTCCCAACCTTACTGGCATGGATCATCTCACCTACTTGGACATGAGCAATAATACTTTCGGC GCTACAGATTTTCCTCCATGGTTTTCAACCTTGCAGTCTTTGACAACACTGGTGATGGAGAAAACACAACTTCAAGGACAGATTCCTTCTGACTTCTTTA GCCTTTCCAATTTGCAGACTCTGGATGCAAGAAATAACAAGTTCAATGGCACATTGGATATTAGAACAAGCTCTATAAACCAACTGTCATTGATTGATTT GCGAGAAAATCAAATTTCTGCCTTCACAGAAAGACCCGGAATAGAAAAAGTGGGCGTAATACTTGTAGACAACCCAGTTTGTCAGGAAACAGGAGTGACA GAAAGTTACTGCAGTGTTTCCCAAAACGAATCTTCCTATTCAACGCCTCTAAATAACTGTGTAGCTTCTTCGTGCTTTGCTAATCAGATTTCCAGTCCGA ACTGTAAATGTGCATTTCCATACACAGGACTTCTACAGTTCAGAGCTCCTTCATTCTCGAACCTGGGAAACGACACTTATTACACTGTTTTAGAACAGTC TCTGATGAACTCATTCAAGTTTCATCAACTTCCTGTGGATTCAGTAAATCTAAGTCATCCAAGAAAAGATTCATCAACATACCTTGTTATGAATCTGCAA GTGTTTCCATTTGGCCAAGATCGTTTCAATTGGACAGGAATTTCAAGAATTGGTTTTGCGCTGAGCAACCAGATTTTCAAGCCTCCATCGCAATTCGGAC CTTTCGTGTTTCATGGTGATACGTATCTAAATTTCGCAGGTAAAGAAGTTACAGGATCAAACAAATCATCAAACACTGGTGTTATCATTGGAGCTGTGGC GGGTGGCTCTGTCCTCCTGCTGCTATTGCTCGGCGCTGGGCTCTATGCTCATCGCCAAAAGAAGAGAGCAGAAAAGGCAACTGAACAAAACAATCCTTTT GCACAGTGGGAATCAAACAAGAGTATCGGAGGTGTTCCTCAATTAAAAGGAGCCAGAAACTTCTCTTTTGAAGAGCTCAGGAAATACAGCAATAACTTCT CAGAGACCAATGACATTGGTTCTGGGGGTTATGGAAACGTTTATAGAGGAGTTCTTCCTACTGGAGAACTAATTGCCATCAAACGAGCTCAACAAGGATC GATGCAGGGTGGGCTAGAATTCAAGACTGAGATTGAACTTTTATCCAGAGTCCACCACAAAAATGTTGTAAGCCTTATAGGCTTTTGCTTCGACAGAGGT GAACAAATGCTCGTATATGAGTTTGTTCCAAATGGCAGTCTCATGGAAAGCCTATCAGGGAAGACAGGAATCAGGCTTGATTGGGTGAGGAGACTAAAAG TGGCCCTTGGTGCAGCAAGAGGTTTGGCCTATCTGCATGAACTTGCCAACCCTCCCATTATCCACAGGGACATAAAGTCAAGCAACATACTATTAGATGA GCGTTTAAATGCAAAAGTTGCCGATTTTGGTCTCTCCAAGCCTATGGGAGACAGCGAAACGGGTCATCTGACTCATGTTACAACTCAAGTGAAGGGGACG ATGGGTTATATGGATCCAGAATATTACATGACCCAGCAGCTGACAGAGAAGAGTGATGTTTACAGCTTTGGAGTTGTCATGCTGGAACTATTAACCGGAA AAAGGCCGATAGAAAAGGGGAAGTACGTGGTGAGAGAGGTAAAGACGGCATTGGATAGAGCAAAATATTTGTACAACCTCGGCGAACTTCTTGACTCAAG CATTGGTTTAGACACAACATTGAAAGGTCTAGATAAGTTTGTGGACGTTGCATTGAAATGTGTAGAAGAGAACGGAAGTGACAGGCCAACAATGGGTGAA GTGGTGAAAGAGATTGAGAATATCTTGCATCTTGCTGGTCTGAACCCTAATGCGGATTCTGCATCCACTTCGGCAAGTTACGACGATGCAAGCAAGGGAA ATGCTAAACATCCATACATTTTTAGCAAGGATGCCTTTGATTACAGTGGGGACTTCCCAGCTTCGAAGGTAGAGCCACTATGA
AA sequence Show only first row Show all	>Potri.004G231700.1 pacid=42794677 polypeptide=Potri.004G231700.1.p locus=Potri.004G231700 ID=Potri.004G231700.1.v4.1 annot-version=v4.1 MGSRILVFLVVALIQVCTTTPAVTNNDDFNALKALKDVWDNVPPTWVGADPCGSRWDGIVCTNSRVTSITLASMGLKGTLSGDISLLSELQILDLSYNTE LTGSLPLAIGDLKKLTNLILVRCRFSGPIPDAIGSLSQLTDLSLNSNRFSGSIPPSLGNLDKLFWLDLADNMLTGTIPVSTGTTPGLDLLVHTKHFHLGF NQLTGQIPPKLFSSGMNLIHVLLESNKLTGSIPSTLGLVKSLEVVRLDNNSLTGPVPSNINNLTSVSEMFLSNNGLTGPLPNLTGMDHLTYLDMSNNTFG ATDFPPWFSTLQSLTTLVMEKTQLQGQIPSDFFSLSNLQTLDARNNKFNGTLDIRTSSINQLSLIDLRENQISAFTERPGIEKVGVILVDNPVCQETGVT ESYCSVSQNESSYSTPLNNCVASSCFANQISSPNCKCAFPYTGLLQFRAPSFSNLGNDTYYTVLEQSLMNSFKFHQLPVDSVNLSHPRKDSSTYLVMNLQ VFPFGQDRFNWTGISRIGFALSNQIFKPPSQFGPFVFHGDTYLNFAGKEVTGSNKSSNTGVIIGAVAGGSVLLLLLLGAGLYAHRQKKRAEKATEQNNPF AQWESNKSIGGVPQLKGARNFSFEELRKYSNNFSETNDIGSGGYGNVYRGVLPTGELIAIKRAQQGSMQGGLEFKTEIELLSRVHHKNVVSLIGFCFDRG EQMLVYEFVPNGSLMESLSGKTGIRLDWVRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKPMGDSETGHLTHVTTQVKGT MGYMDPEYYMTQQLTEKSDVYSFGVVMLELLTGKRPIEKGKYVVREVKTALDRAKYLYNLGELLDSSIGLDTTLKGLDKFVDVALKCVEENGSDRPTMGE VVKEIENILHLAGLNPNADSASTSASYDDASKGNAKHPYIFSKDAFDYSGDFPASKVEPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231700 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231850 [exp]	1.00	0.9600
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	2.00	0.9278	Pt-GLU1.2
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	6.00	0.9101
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	6.48	0.8985
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	9.16	0.9139
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	11.31	0.8916	Pt-ATMRP14.3
AT1G70100			unknown protein		Potri.010G038100 [exp]	11.66	0.8794
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	13.49	0.8832
AT4G27220			NB-ARC domain-containing disea...		Potri.019G013140 [exp]	15.49	0.9047
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	18.76	0.8882

Compare expression of checked genes

Potri.004G231700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.