Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 902 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 856 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 830 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 579 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 426 / 1e-134 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 395 / 6e-125 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 358 / 2e-114 Leucine-rich repeat (LRR) family protein (.1) AT5G62230 330 / 5e-99 ERL1 ERECTA-like 1 (.1.2) AT5G37450 319 / 8e-95 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 305 / 2e-89 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231700 [exp] 1643 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 1464 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 1186 / 0 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 984 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 981 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 972 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 932 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 924 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 889 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 1073 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 959 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 447 / 2e-148 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 411 / 4e-129 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 408 / 2e-127 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 380 / 9e-124 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 396 / 9e-123 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 360 / 7e-110 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 339 / 7e-106 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 337 / 3e-101 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G231850.3 pacid=42795212 polypeptide=Potri.004G231850.3.p locus=Potri.004G231850 ID=Potri.004G231850.3.v4.1 annot-version=v4.1 ATGGGTTCAAGAATTCTTGTGTTCTTGGTTGTTGCTCTAATTCAAGTTTGTACCACCACACCAGCAGTGACTAACAATGATGATTTTAATGCACTGAAAG CTCTCAAGGATGTCTGGGATAACGTACCACCAACATGGGTGGGGGCTGACCCTTGTGGTAGCAGGTGGGATGGCATTGTGTGCACCAATTCGCGTGTGAC TTCCATAACATTGGCAAGCATGGGATTGAAAGGAACACTGTCTGGAGACATCTCACTCTTGTCAGAATTGCAGATTCTGGATTTATCCTACAACACAGAA TTGACTGGCTCTCTTCCTCTAGCAATTGGGGATTTGAAGAAGCTAACAAACTTAATACTGGTTCGCTGTCGTTTCTCTGGTCCTATCCCCGATGCAATAG GATCTTTGTCACAGCTAACCGATCTATCTCTCAATTCGAATCGCTTCAGTGGATCAATTCCCCCGTCACTTGGCAATCTAGATAAACTTTTTTGGCTGGA TCTTGCTGATAACATGCTTACTGGGACCATCCCAGTTTCTACAGGCACTACTCCTGGCCTTGACCTACTAGTTCATACAAAACACTTTCATCTTGGATTT AATCAGCTCTCAGGCCAAATCCCGCCTAAACTTTTTAGCTCAGGGATGAATCTCATACATGTACTTCTTGAGAGCAACAATCTGACAGGCAGCATTCCTT CCACCCTTGGCCTTGTGAAGTCTTTGGAGGTTGTGCGTCTTGATAATAATTCGCTCACTGGACCTGTTCCAACAAACATCAATAATCTTACCAGTGTCAG TGAGATGTTTTTATCCAACAATGGCTTAACTGGGCCACTTCCCAACCTTACTGGCATGGATCATCTCACCTACTTGGACATGAGCAATAATACTTTCGGC GCTACAGATTTTCCTCCATGGTTTTCAACCTTGCAGTCTTTGACAACACTGGTGATGGAGACAACACAACTTCAAGGACAGATTCCTTCTGACTTCTTTA GCCTTTCCAATTTGCAGACTCTGGATGCAAGAAATAACAAGTTCAATGGCACATTGGATATTAGAACAAGCTCTATAAACCAACTGTCATTGATTGATTT GCGAGAAAATCAAATTTCTGCCTTCACAGAAAGACCCGGAGTAGAAAAAGTGGGCGTAATGACTTCTACAGTTCAGAGCTCCTTCATTCTCAACCTGGGA AACGACACTTATTACACTGTTTTAGAACAGTCTCTGATGGACTCATTCAAGTTTCATCAACTTCCTGTGGATTCAGTAAATCTAAGTCATCCAAGAAAAG ATTCATCAACATACCTTGTTATGAATCTGCAAGTGTTTCCATTTGGCCAAGATCGTTTCAATTGGACAGGAATTTCAAGAATTGGTTTTGCGCTGAGCAA CCAGATTTTCAAGCCTCCATCGCAATTCGGACCTTTCGTGTTTCATGGTGATACGTATCTAAATTTCGCAGAAGAAGTTACAGGATCAAACAAATCATCA AACACTGGTGTTATCATTGGAGCTGTGGCGGGTGGCTCTGTCCTCCTGCTGCTATTGCTCGGCGCTGGGCTCTATGCTCATCGCCAAAAGAAGAGAGCAG AAAAGGCAACTGAACAAAACAATCCTTTTGCACAGTGGGAATCAAACAAGAGTATCGGAGGTGTTCCTCAATTAAAAGGAGCCAGAAACTTCTCTTTTGA AGAGCTCAGGAAATACAGCAATAACTTCTCAGAGACCAATGACATTGGTTCTGGGGGTTATGGAAACGTTTATAGAGGAGTTCTTCCTACTGGAGAACTA ATTGCCATCAAACGAGCTCAACAAGGATCGATGCAGGGTGGGCTAGAATTCAAGACTGAGATTGAACTTTTATCCAGAGTCCACCACAAAAATGTTGTAA GCCTTATAGGCTTTTGCTTCGACAGAGGTGAACAAATGCTCGTATATGAGTTTGTTCCAAATGGCAGTCTCATGGAAAGCCTATCAGGGAAGACAGGAAT CAGGCTTGATTGGGTGAGGAGACTAAAAGTGGCCCTAGGTGCAGCAAGAGGTTTGGCCTATCTGCATGAACTTGCCAACCCTCCCATTATCCACAGGGAC ATAAAATTAAGCAACATACTATTAGATGAGCGTTTAAATACAAAAGTTGCCGATTTTGGTCTCTCCAAGCCTATGGGAGACAGCGAAACGGGTCATCTGA CTCATGTTACAACTCAAGTGAAGGGGACGATGGGTTATATGGATCCAGAATATTACATGACCCAGCAGCTGACAGAGAAGAGTGATGTTTACAGCTTTGG AGTTGTCATGCTGGAACTATTAACCGGAAGAAGGCCGATAGAAAAGGGGAAGTACGTGGTGAGAGAGGTAAAGACGGCATTGGATAGAGCAAAATATTTG TACAACCTCGGCGAACTTCTTGACTCAAGCATTGGTTTAGACACAACATTGAAAGGTCTAGATAAGTTTGTGGACGTTGCATTGAAATGTGTAGAAGAGA ACGAAAGTGACAGGCCAACAATGGGTGAAGTGGTGAAAGAGATTGAGAATATCTTGCATCTTGCTGGTCTGAACCCTAATGCGGATTCTGCATCCACTTC GGCAAGTTACGACGATGCAAGCAAGGGAGGCGCTAAACATCCATACATTTTTAGAACGGAAGTGGCTTGGATTTGA
AA sequence Show only first row Show all	>Potri.004G231850.3 pacid=42795212 polypeptide=Potri.004G231850.3.p locus=Potri.004G231850 ID=Potri.004G231850.3.v4.1 annot-version=v4.1 MGSRILVFLVVALIQVCTTTPAVTNNDDFNALKALKDVWDNVPPTWVGADPCGSRWDGIVCTNSRVTSITLASMGLKGTLSGDISLLSELQILDLSYNTE LTGSLPLAIGDLKKLTNLILVRCRFSGPIPDAIGSLSQLTDLSLNSNRFSGSIPPSLGNLDKLFWLDLADNMLTGTIPVSTGTTPGLDLLVHTKHFHLGF NQLSGQIPPKLFSSGMNLIHVLLESNNLTGSIPSTLGLVKSLEVVRLDNNSLTGPVPTNINNLTSVSEMFLSNNGLTGPLPNLTGMDHLTYLDMSNNTFG ATDFPPWFSTLQSLTTLVMETTQLQGQIPSDFFSLSNLQTLDARNNKFNGTLDIRTSSINQLSLIDLRENQISAFTERPGVEKVGVMTSTVQSSFILNLG NDTYYTVLEQSLMDSFKFHQLPVDSVNLSHPRKDSSTYLVMNLQVFPFGQDRFNWTGISRIGFALSNQIFKPPSQFGPFVFHGDTYLNFAEEVTGSNKSS NTGVIIGAVAGGSVLLLLLLGAGLYAHRQKKRAEKATEQNNPFAQWESNKSIGGVPQLKGARNFSFEELRKYSNNFSETNDIGSGGYGNVYRGVLPTGEL IAIKRAQQGSMQGGLEFKTEIELLSRVHHKNVVSLIGFCFDRGEQMLVYEFVPNGSLMESLSGKTGIRLDWVRRLKVALGAARGLAYLHELANPPIIHRD IKLSNILLDERLNTKVADFGLSKPMGDSETGHLTHVTTQVKGTMGYMDPEYYMTQQLTEKSDVYSFGVVMLELLTGRRPIEKGKYVVREVKTALDRAKYL YNLGELLDSSIGLDTTLKGLDKFVDVALKCVEENESDRPTMGEVVKEIENILHLAGLNPNADSASTSASYDDASKGGAKHPYIFRTEVAWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231850 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231700 [exp]	1.00	0.9600
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	1.41	0.9283
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Potri.011G091200 [exp]	5.65	0.8275	MRP1.1
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	7.54	0.8922	Pt-GLU1.2
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	7.93	0.8663
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	11.95	0.8544	CNX2.1
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	12.00	0.8785
AT1G62810			Copper amine oxidase family pr...		Potri.001G118200 [exp]	18.33	0.8490
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	21.07	0.8589
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	22.44	0.8042

Compare expression of checked genes

Potri.004G231850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.