Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 750 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 594 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 379 / 5e-116 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 374 / 2e-114 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 365 / 6e-111 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 274 / 9e-82 Leucine-rich repeat (LRR) family protein (.1) AT3G24550 249 / 5e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 242 / 4e-70 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT5G37450 249 / 3e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 244 / 6e-69 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231500 [exp] 1606 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 1465 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 1380 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 1380 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 1008 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 984 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 904 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 819 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 748 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 888 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 789 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 371 / 2e-118 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 319 / 1e-99 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 318 / 4e-97 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 257 / 1e-71 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011098 [exp] 249 / 4e-71 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013014 [exp] 243 / 6e-71 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10019114 [exp] 253 / 2e-70 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 253 / 2e-70 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G232301.1 pacid=42796672 polypeptide=Potri.004G232301.1.p locus=Potri.004G232301 ID=Potri.004G232301.1.v4.1 annot-version=v4.1 ATGTGTCCCAAAGTTCTCACGTTTTTGCTGGTTGCTTCCTTTCAGATTTATACAGAGACCTATGGTGATGATTTTACAGTAATGAGTATTCTCAAGGATG CCTGGGAAAACACACCACGTAATTGGGTGGGTGCAGATCCCTGTGGAGGCAAATGGGAAGGCATTTCATGTCACAATTCACGTGTGACTTCGATAACGTT GGCAGCTGTGGGATTGACGGGTGAGCTGTCTGGAGACATCTCCTCCTTATCAGAATTGGAGTCTCTGGATCTATCGTACAACACGGGTTTGAGCGGTACA CTTCCGGCATCAATTGTGAATTTGAAGAAGCTAAAAATCTTAAAGTTGGTTGGTTGTCGTTTCTCTGGTCCTATCCCTGAGTTGATAGGGTCTCTTCAGC TGCTGGAGTCTCTAGACCTGAATTCTAATAGATTCACTGGACCAATTCCACATTCAATTGGAAACCTTTCGAAACTCTTTCTGCTGGATCTATCTAATAA TATGCTCGATGGAGCCATCCCTGTCTCCAGTGGAACTACATCTGGTCTTGATATGCTAGTTAATGCAAACCACTTTCATCTAGGAGGGAATCAGCTCTCA GGCACAATCCCGAAAGAGCTTTTCAGATCAAACATGACTCTCATTCATGTGCTTTTGCATGACAATAATCTCACGGGAAGCATTCCTTCTACCCTTGGAC TTGTGCACACTTTGGAGGCTGTACGTTTTGAAGGGAATTCATTAACTGGACCTGTCCCTCCAAACCTCAACAATCTTACCACTCTGAAGACGTTGATTTT GTCCAACAATAAATTTACTGGGCCTGTTCCTAATCTCACTGGCATGGCTTATCTCAGCTACTTGGACCTGAGCAATAATAGTTTTGACGCTTCAGATTTT CCGTTGTCATTCTCAAACTTACGGGCTTTGACAACACTAATGATGGAAAACACTGGACTTGAAGGTCGGATTCCTCCTACACTCTTCGATCTTCCTAGTT TACAGACTTTGATTCTAAGGAACAACCAGCTCAATGGCACATTGGATATTGCAACAAGCTCTAGCAGCCAACTGAAAGTCATTGATATGCGAAACAATCT CATTTCTTCATTCTATTCAGAAACACCAGAACGAAGGAATAACGTGGATGTAATACTTGTGGGTAACCCAGTTTGTGAGCATCCAGAAGCAACAGAAAAT TACTGCACAGTTCCTCAAGCCAATTCTTCGTATACGAGGCTACCAGAGAAATGTGTTCCCCTCCACTGCATTTCAGACCAGATTTCCAGTCCCAATTGCA AATGCTCGTATCCATACAGGGGAGTACTAGTCTTCAAACCTCCATTTTTAGAGTCAAGAAACTCAACTTATTATGTACATCTGGAAGAAGAGTCTCTGAT GCGTTCCTTCAAGTTCCATCAACTTCCTGTGGATTCAGTTGATGTAAATTTTCCAGCGAAGGATTCGTTTGGGTATCTTGAGTCAAATTTATCTATGTTT CCGTCGGGCCAAAATCATTTTAACACAGCTACGATTTCTGATATTGGATTTGTGCTAACCCTTCAGACTTATGAGAATTCAGATATCTTTGGACCTACAT ATTTTAAGGGTTCTGCATATCCATACTTCGATGGTACTTACACATTTCATGCACAAGTGAGAGATTGGTTTGCATTGTTCTTTCTTTCTTCTGATGACAC ATCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTGTCATGCAGGAAAACCTACGATGTCAAAAGAGTTATCAAGCACTGGAAGGATCATT GGGGCTGCGGCTGGAGGAGCCTCTTTCCTGCTACTATTGCTTCTTGCAGGGGTATGTGCTTATCGTCAGAAGAACAGAAGAGAAAGAGCCAGTGAACAGA AGAATTATTTTGCATACTTGGATTCAAGGAACAGTAACAGCGTTCCTCAGTTGAAGGGAGCCAGATGCTTCTCTTTTAATGAGATTACGAAGTGCACGAA TAATTTTTCGGAAGCCAATCATATTGGGTTAGGGGGTTACGGAATGGTTTATAGAGGGATGCTTCCTACTGGACAACTGTTTGCCGTCAAACGATGTCGT CAAGGATCGGTGCAAGGTGGGCTTGAATTCAACGCAGAGATAGAAGTTTTATCGAGAGTTCATCATAAAAATGTTGTAAACCTTGTTGGGTTTTGCTTTG AGAGAGGTGAACAGATGCTAATTTATGAGTTTGTTCGCAATGGTAGTCTCAGGGACAGCCTATCAGGTTTGAGCGGGATCTGGCTGGATTGGAGGAGGAG ACTTAATGTGGCTCTTGGTGCAGCAAGAGGTCTTGCCTACTTGCACGAGCTTGTCAACCCTCGTATTATCCACAGGGACGTAAAATCAGCTAACATATTA CTGGATGAATGCTTAAATGCTAAAGTTGGTGATTTTGGTCTTTCCAAGCCTATGGACAATAGTGAGCTTATTCTTGCTAGCACTCAAGTTAAAGGGACAA TGGGTTATATAGATCCAGAATATCAGAAGACCCTGCTCTTGACTGAGAAGAGTGATGTCTATGGCTTTGGAGTTGTGTTGCTGGAACTAGTAAGTGGAAG AAAGCCTTTAGAGCGAGGGAAATACCTTGTAGCGGAGGTAAGTAGCTCATTGGATAGAAAAAAAGATCTATATAACCTTCATGAACTTCTTGACCCAAGC ATTGGTTTAGACACGAAGCCGAAAGGTCTAGATAAGATAGTGGATCTGGCAATGAAATGTGTACAAGAGAAAGGAAGTGACAGGCCAACAATGGGTGAAG TGGTGAAAGAGATTGAGAATATCTTGCATCTTGCTGGTTCAAACCCCAATGCTGAAGCAGAATCCACTTCAGCTAGTTTTGAGGAAGCAAGCCAGGACGA GTTTCCACCATCCTTGAAGGAAGAAGAGCTTTCATTATCTTGA
AA sequence Show only first row Show all	>Potri.004G232301.1 pacid=42796672 polypeptide=Potri.004G232301.1.p locus=Potri.004G232301 ID=Potri.004G232301.1.v4.1 annot-version=v4.1 MCPKVLTFLLVASFQIYTETYGDDFTVMSILKDAWENTPRNWVGADPCGGKWEGISCHNSRVTSITLAAVGLTGELSGDISSLSELESLDLSYNTGLSGT LPASIVNLKKLKILKLVGCRFSGPIPELIGSLQLLESLDLNSNRFTGPIPHSIGNLSKLFLLDLSNNMLDGAIPVSSGTTSGLDMLVNANHFHLGGNQLS GTIPKELFRSNMTLIHVLLHDNNLTGSIPSTLGLVHTLEAVRFEGNSLTGPVPPNLNNLTTLKTLILSNNKFTGPVPNLTGMAYLSYLDLSNNSFDASDF PLSFSNLRALTTLMMENTGLEGRIPPTLFDLPSLQTLILRNNQLNGTLDIATSSSSQLKVIDMRNNLISSFYSETPERRNNVDVILVGNPVCEHPEATEN YCTVPQANSSYTRLPEKCVPLHCISDQISSPNCKCSYPYRGVLVFKPPFLESRNSTYYVHLEEESLMRSFKFHQLPVDSVDVNFPAKDSFGYLESNLSMF PSGQNHFNTATISDIGFVLTLQTYENSDIFGPTYFKGSAYPYFDGTYTFHAQVRDWFALFFLSSDDTSSSLPPSLPPSLPLCHAGKPTMSKELSSTGRII GAAAGGASFLLLLLLAGVCAYRQKNRRERASEQKNYFAYLDSRNSNSVPQLKGARCFSFNEITKCTNNFSEANHIGLGGYGMVYRGMLPTGQLFAVKRCR QGSVQGGLEFNAEIEVLSRVHHKNVVNLVGFCFERGEQMLIYEFVRNGSLRDSLSGLSGIWLDWRRRLNVALGAARGLAYLHELVNPRIIHRDVKSANIL LDECLNAKVGDFGLSKPMDNSELILASTQVKGTMGYIDPEYQKTLLLTEKSDVYGFGVVLLELVSGRKPLERGKYLVAEVSSSLDRKKDLYNLHELLDPS IGLDTKPKGLDKIVDLAMKCVQEKGSDRPTMGEVVKEIENILHLAGSNPNAEAESTSASFEEASQDEFPPSLKEEELSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232301 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231600 [exp]	3.00	0.9289
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012700 [exp]	3.87	0.8510	Pt-FAD2.1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.015G141800 [exp]	6.00	0.8261
AT1G50110			D-aminoacid aminotransferase-l...		Potri.009G082600 [exp]	6.92	0.8378
AT1G79620			Leucine-rich repeat protein ki...		Potri.004G231551 [exp]	17.94	0.8349
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	18.33	0.7731
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048800 [exp]	22.27	0.7625
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072866 [exp]	23.23	0.8118
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	24.37	0.8031
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231300 [exp]	27.56	0.8263

Compare expression of checked genes

Potri.004G232301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.