Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 1011 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 921 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 905 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 768 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 484 / 1e-155 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 386 / 3e-124 Leucine-rich repeat (LRR) family protein (.1) AT3G53590 364 / 3e-112 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 315 / 7e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 304 / 1e-88 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 281 / 1e-82 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231700 [exp] 1709 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 1460 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 1063 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 1051 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 1041 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 1018 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 976 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 970 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 961 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 1202 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 1093 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 479 / 7e-154 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 469 / 9e-150 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 450 / 8e-149 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 427 / 4e-139 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 384 / 1e-124 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 359 / 6e-109 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 346 / 5e-104 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 311 / 2e-91 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G232400.1 pacid=42793833 polypeptide=Potri.004G232400.1.p locus=Potri.004G232400 ID=Potri.004G232400.1.v4.1 annot-version=v4.1 ATGGGTTCAAGAATTCTTGTGTTCTTGGTTGTTGCTCTAATTCAAGTTTGTACCACACCAGCAGTGACTAACAATGATGATTTTAATGCACTGAAAGCTC TCAAGGATGTCTGGGAAAACGTACCACCAACATGGGTGGGGGCTGACCCTTGTGGAAGCAGGTGGGATGGCATTTTGTGCACCAATTCGCGTGTGACTTC CATAACATTGGCAAGCATGAGATTGAAAGGAACACTGTCTGGAGACATCTCAAACTTGTCAGAATTGCAGATTCTGGATTTATCCTACAACACAGAATTG AGTGGCCCTCTTCCTCCAGCAATTGGGAATTTGAAGATGCTAACAAGCTTAATACTGGTTGGCTGTCGTTTCTCTGGTCCTGTCCCCGATTCAATAGGAT CTTTGCCACGGCTCACCTATCTATCTCTCAATTCGAATGGCTTCACTGGAACAATTCCCCCTTCACTTGGCAATCTAGATAACCTTTATTGGCTGGATCT TGCTGATAACAGGCTTACTGGGACCATCCCAGTCTCTACAGAGACTACTCCTGGCCTTGACCTACTAGTTCATACAAAACACTTTCATTTTGGATTTAAT CAGCTCTCAGGCCAAATCCCGCCTAAACTTTTTAGCTCAGGGATGGCTCTCATACATGTACTTCTTGAGAGCAACAAGCTGACAGGCAGCATTCCTTCCA CCCTTGGCCTTGTGAAGTCTTTGGAGGTTGTGCGTCTTGATAATAATTCGCTCACTGGACCTGTTCCTTCAAACATCAATAATCTTACCAGTGTCAGTGA GATGTTTTTATCCAACAATGGCTTAACTGGGCCACTTCCCAACCTTACTGGCATGGATCATCTCACCTACTTGGACATGAGCAATAATACTTTCGGCGCT ACAGATTTTCCTCCATGGTTTTCAACCTTGCAGTCTTTGACAACATTGGTGATGGAGAGAACACAACTTCAAGGACAGATTCCTTCTGACTTCTTTAGCC TTTCCAATTTGCAGACTGTGGATGCAAGAAATAACAAGCTCAATGGCACATTGGATATTGGAACAAGCTCTATAAACCAACTGTCATTGATTGATTTGCG ACAAAATCAAATTTCTGGCTTCACAAACAGACCAGGAGTAGAAAAAGTGGGCGTAATACTTGTAGGCAACCCAGTTTGTCAGGAATCAGGAGTGACAGAA AGATACTGCAGTGTTCCCCAAACCGAATCTTCCTATTCAACGCCTCTAAATAACTGTGTAGCTTCTTTGTGCTTTGCTAATCAGATTTCCAGTCCGAACT GTAAATGTGCACTTCCATACACAGGACTTCTAAAGTTCAGAGCTCCTTCATTCTCGAACCTGGGAAACAACACTTATTACACTGTTCTTGAAAAGTCTCT GATGGACTCATTCAAGTTACATCAACTTCCTGTGGATTCAGTTAATCTAAGTCATCCAAGAAAAGATTCATCTACTTACCTTGTTTTGAATCTGCAAGTG TTTCCATTTGGCCATGATCGTTTCAATCGAACAGGAGTTTCAAGTATTGGTTTTGCGCTGAGCAACCAGACTTTCAAGCCTCCACCGCAATTCGGACCTT TCTTTTTTATTGGTGATGCGTATCTAAATTTCGCAGACGAAGTTACAGGATCAAAAAAATCATCGCAAACTGGTGTTATCGTTGGAGCTGTGGCGGGTGG CTCTGTCCTCCTGCTGCTATTGCTGGGCGCTGGGCTCTATGCTCATCGCCAAAAGAAGAGAGCAGAAAAGGCAACTGAACAAAACAATCCTTTTGCACAG TGGGAATCAAACAAGAGTATCGGAGGTGTTCCTCAATTAAAAGGAGCCAGAAACTTCTCTTTTGAAGAGCTCAGGAAATACAGCAATAACTTCTCAGAGA CCAATGACATTGGTTCTGGGGGTTATGGAAACGTTTATAGAGGAGTTCTTCCTACTGGAGAACTAATTGCCATCAAACGAGCTCAACAAGGATCGATGCA GGGTGGGCTAGAATTCAAGACTGAGATTGAACTTTTATCCAGAGTCCACCACAAAAATGTTGTAAGCCTTATAGGCTTTTGCTTCGACAGAGGTGAACAA ATGCTCGTATATGAGTTTGTTCCAAATGGCAGTCTCATGGAAAGCCTATCAGCAGGGAAGACAGGAATCAGGCTTGATTGGGTGAGGAGACTAAAAGTGG CCCTTGGTGCAGCAAGAGGTTTGGCCTATCTGCATGAACTTGCCAACCCTCCCATTATCCACAGGGACATAAAATCAAGCAACATACTACTAGATGAGCG TTTAAATGCAAAAGTTGCCGATTTTGGTCTCTCCAAGCCTATGGGAGACAGCGAAACGGGTCATCTGACTCATGTTACAACTCAAGTGAAGGGGACGATG GGTTATATGGATCCAGAATATTACATGACCCAGCAGCTGACAGAGAAGAGTGATGTTTACAGCTTTGGAGTTGTCATGCTGGAACTATTAACCGGAAGAA GGCCGATAGAAAAGGGGAAGTACGTGGTGAGAGAGGTAAAGACGGCATTGGATAGAGCAAAATATTTGTACAACCTCGGCGAACTTCTTGACTCAAGCAT TGGTTTAGACACAACATTGAAAGGTCTAGATAAGTTTGTGGACGTTGCATTGAAATGTGTAGAAGAGAACGGAAGTGACAGGCCAACAATGGGTGAAGTG GTGAAAGAGATTGAGAATATCTTGCATCTTGCTGGTCTGAACCCTAATGCGGATTCTGCATCCACTTCGGCAAGTTACGACGATGCAAGCAAGGGAAATG CCAAACATCCATACATTTTTAGCAAGGATGCCTTTGATTACAGTGGGGGCTTCCCAGCTTCGAAGGTAGAGCCACTATGA
AA sequence Show only first row Show all	>Potri.004G232400.1 pacid=42793833 polypeptide=Potri.004G232400.1.p locus=Potri.004G232400 ID=Potri.004G232400.1.v4.1 annot-version=v4.1 MGSRILVFLVVALIQVCTTPAVTNNDDFNALKALKDVWENVPPTWVGADPCGSRWDGILCTNSRVTSITLASMRLKGTLSGDISNLSELQILDLSYNTEL SGPLPPAIGNLKMLTSLILVGCRFSGPVPDSIGSLPRLTYLSLNSNGFTGTIPPSLGNLDNLYWLDLADNRLTGTIPVSTETTPGLDLLVHTKHFHFGFN QLSGQIPPKLFSSGMALIHVLLESNKLTGSIPSTLGLVKSLEVVRLDNNSLTGPVPSNINNLTSVSEMFLSNNGLTGPLPNLTGMDHLTYLDMSNNTFGA TDFPPWFSTLQSLTTLVMERTQLQGQIPSDFFSLSNLQTVDARNNKLNGTLDIGTSSINQLSLIDLRQNQISGFTNRPGVEKVGVILVGNPVCQESGVTE RYCSVPQTESSYSTPLNNCVASLCFANQISSPNCKCALPYTGLLKFRAPSFSNLGNNTYYTVLEKSLMDSFKLHQLPVDSVNLSHPRKDSSTYLVLNLQV FPFGHDRFNRTGVSSIGFALSNQTFKPPPQFGPFFFIGDAYLNFADEVTGSKKSSQTGVIVGAVAGGSVLLLLLLGAGLYAHRQKKRAEKATEQNNPFAQ WESNKSIGGVPQLKGARNFSFEELRKYSNNFSETNDIGSGGYGNVYRGVLPTGELIAIKRAQQGSMQGGLEFKTEIELLSRVHHKNVVSLIGFCFDRGEQ MLVYEFVPNGSLMESLSAGKTGIRLDWVRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDERLNAKVADFGLSKPMGDSETGHLTHVTTQVKGTM GYMDPEYYMTQQLTEKSDVYSFGVVMLELLTGRRPIEKGKYVVREVKTALDRAKYLYNLGELLDSSIGLDTTLKGLDKFVDVALKCVEENGSDRPTMGEV VKEIENILHLAGLNPNADSASTSASYDDASKGNAKHPYIFSKDAFDYSGGFPASKVEPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231850 [exp]	1.41	0.9283
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	2.44	0.9064
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.007G133400 [exp]	4.24	0.8962
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.014G102000 [exp]	5.29	0.8539
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	5.47	0.8871
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063200 [exp]	6.70	0.8530
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	6.92	0.8387
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	9.59	0.8902	Pt-GLU1.2
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231700 [exp]	13.49	0.8832
AT3G59430			unknown protein		Potri.007G128500 [exp]	14.07	0.7985

Compare expression of checked genes

Potri.004G232400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.