Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 874 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 844 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 808 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 729 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 434 / 5e-137 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 396 / 1e-122 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 371 / 6e-115 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 335 / 5e-105 Leucine-rich repeat (LRR) family protein (.1) AT5G37450 309 / 1e-90 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 275 / 1e-80 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231700 [exp] 1055 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 1045 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 870 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 869 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 867 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 856 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 826 / 0 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 816 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 813 / 0 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 1002 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 904 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 440 / 5e-139 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 414 / 3e-135 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 422 / 3e-132 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 405 / 2e-125 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 392 / 3e-121 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 387 / 1e-119 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 365 / 3e-115 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 367 / 1e-111 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G232500.5 pacid=42795652 polypeptide=Potri.004G232500.5.p locus=Potri.004G232500 ID=Potri.004G232500.5.v4.1 annot-version=v4.1 ATGGGTTCAGGACTTCCCGTTTTCCTGCTGATCACCTGCCTTCAAGTTCTAGTTATAGCGGCAGTGACAGACTCTAATGACTTATCTGCTCTAAATTCTC TCAAGAGTAACTGGAAGAACACACCGCCGACTTGGATTGGTTCTGATCCTTGTGGCGGTGGGTGGGAAGGAATATGGTGCACCGGTTCTCGTATCACCTC CATAGTACTCTCAGGCATGGGATTGTCCGGCACGTTGACTGGCGACATCGGCAATTTTCCAGAGCTGCAAACTCTGGATTTGTCTCAAAACAATGGTTTG ACAGGAATTCTCCCATCAGCAATAGTAAATCTGAAGAAGCTTGAAAATCTATTCCTTGTTGATTGCAATTTTAATGGACCAATTCCTGACGGGATAGGAT CTCTAACGCAGCTGGTCTCATTATCTCTAGCTTCCAACAACTTCAATGGACCAATACCACCTTCCATCGGCAAAATGTCTAATCTTTCTCTGCTGGATTT AACCGACAATAAACTCAGCGGGACAATTCCAGTATCTGATGGGACTTCGCCTGGTTTAGATTTGCTGCTAAAAGCAAAGCACTTTCATTTGGGGAAAAAT CAGTTAACCGGCGGAATTCCATCAAACCTTTTCAGCTCAAATATGAGTCTCATACATGTGCTTTTTGACAGCAACCAACTTAGTGGCAACTTTCCTTCTA CACTGGAACTAGTACAAACCTTGGAGGCGATACGTCTAGATAGGAATTCATTAACCGGGCCCATCCTTTTCAACTTCACCAGTCTCCCAAGTCTTTCCGA GCTGTACTTGTCTAACAATAAATTTTCTGGATCAATGCCTGACCTCAGTGGCATGAAGGTCCTCACCTATGTGGACATGAGCAACAATAGTTTTGACGCA TCATTAATCCCACCATGGTTTTCAAGCCTACAATCCATGACATCATTAATAATGGAGCGCACGCAGCTTCAAGGACCAATAAATGCCACCCTCTTTAGTC CTGCTCAGTTACAGTCTATAGTATTAAGTAACAACCAGCTTAATGGTTCCTTAGATTTGGGCACCAACTATGGGAGCCAACTGCTACTCGTTGATTTGCA GAACAATTCCATTAGCGAGTTTGCACAAGGAACAGGATACAGCAAAGAATTATTGCTTCTTGGTAATCCGTTTTGTCAGAAGATGCCGTCTTCAGAAAAC TGCATAGTTCCCCAACAGCCAAATTCTTCATATGCTACACCAACAGAAAATTGTGTGGCTCTTTCTTGCAATGCCCAGCAACTTCTCAGTCCAAACTGTA ACTGTGCAAATCCAATAACAGGAATTCTACACTTCAGATCATTTTCCTTCTCAGACTTTCAAAATGGAAGCTATTATACTCTTCTCCAGGCTGCAATGAT GGAATCTTTCAAGTCCGATCAACTTCCCGTTGATTCAATTTCTCTAAGTGTTCCATTGAAGGATGCTTATGATTACCTTGAAGTAAGGCTGGATGTTTTT CCATCTGGCGTTTACGTTTTCAACCGGACAGGATTTTCTGTCATTACATCTCAGCTCAACAACGTAACTTTTGTCAAACTCCCAGATGCTTTTGGACCAT TCTTTTTCACTCTTAATACCGACAACTACTTTACCGGTTCGAACAAGTCATCAAATACTGGGATCGTCATTGGAGCAGCCGTAGGTGGTTCTGTACTTAT GCTACTCTTACTCATGGCTGGAGTTTATGCTTTCCATCAACGGAAAAAGGCAGATCAAGCTACTGAACTAATGAATCCATTCGCATCATGGGACCAAAAT AAAGCCAATGGAGCCGCTCCCCAGATAAAAGGAGTGCTAAGTTTCTCTTTTGAGGAGCTTAAAAAATGCACCAACAATTTTTCTGAGGACAACGCCCTTG GATCTGGGGGATATGGGACGGTTTATAAAGGAACTCTTCCCACTGGTGTGCTAGTTGCCATTAAAAGAGCTAAACAAGGATCATTGCAGGGTAGTCATGA GTTCAAAACTGAGATTGAGCTTCTATCAAGGGTTCATCACAAGAATCTTGTCAGCCTGTTAGGTTTTTGCTATCAGTTAGGTGAACAGATGCTGGTCTAT GAGTACATTAAAAATGGTACTCTTACAGACTGTATTTCAGGTAAGTCAGGCTTCAAGTTAAGTTGGACGAAGAGACTCGGAATAGCATTTGATTCAGCTA GAGGTATTGCGTATTTGCATGAGCTTGCCAATCCACCCATCATACACAGGGACATTAAGTCCACTAATATCCTCCTGGATGATCAGCTAATTGCAAAAGT TGCTGATTTTGGTCTATCAAAACCCGTGGACAATAATGAAGTTCATGTTTCTACTGGAGTCAAAGGGACACTGGGCTACTTGGATCCTGAATATTTCATG TCCGGACAGTTGACTGAGAAAAGTGATGTTTATAGCTTCGGAGTGGTAATGCTGGAGTTAGTTACTGGTCGAAAACCAATAGAACACGGGAGCTATGTTG TGAGAGAGGTGAAAACAGCTATGGGTAACCAGAGGACAAAAGATTCAAGCAACCTAGATGCCATCCTTGATCCCGCTCTTGATCCGGGCAAACCACTGAA AGGCTTAGAGAAGTTTATTGATCTGGCGATTAGGTGTGTCGAAGAATTGGCAGCCAACAGGCCTACAATGAATGAGGTGGTTAAAGAGCTTGAGAACATC CAGCAGCTGGCTGGTTTCAATGGCAATGCTGAAATGGTATCCACCTCAAAAACTTACAGTGAGACAACAGAAGGGAGTTTTTACCACGATTATAACAAAA ACGCCTTCTTTGAGTACAGTGGAACCTTTCCACATTCTGAGATAGAGCTTCAGAAATAA
AA sequence Show only first row Show all	>Potri.004G232500.5 pacid=42795652 polypeptide=Potri.004G232500.5.p locus=Potri.004G232500 ID=Potri.004G232500.5.v4.1 annot-version=v4.1 MGSGLPVFLLITCLQVLVIAAVTDSNDLSALNSLKSNWKNTPPTWIGSDPCGGGWEGIWCTGSRITSIVLSGMGLSGTLTGDIGNFPELQTLDLSQNNGL TGILPSAIVNLKKLENLFLVDCNFNGPIPDGIGSLTQLVSLSLASNNFNGPIPPSIGKMSNLSLLDLTDNKLSGTIPVSDGTSPGLDLLLKAKHFHLGKN QLTGGIPSNLFSSNMSLIHVLFDSNQLSGNFPSTLELVQTLEAIRLDRNSLTGPILFNFTSLPSLSELYLSNNKFSGSMPDLSGMKVLTYVDMSNNSFDA SLIPPWFSSLQSMTSLIMERTQLQGPINATLFSPAQLQSIVLSNNQLNGSLDLGTNYGSQLLLVDLQNNSISEFAQGTGYSKELLLLGNPFCQKMPSSEN CIVPQQPNSSYATPTENCVALSCNAQQLLSPNCNCANPITGILHFRSFSFSDFQNGSYYTLLQAAMMESFKSDQLPVDSISLSVPLKDAYDYLEVRLDVF PSGVYVFNRTGFSVITSQLNNVTFVKLPDAFGPFFFTLNTDNYFTGSNKSSNTGIVIGAAVGGSVLMLLLLMAGVYAFHQRKKADQATELMNPFASWDQN KANGAAPQIKGVLSFSFEELKKCTNNFSEDNALGSGGYGTVYKGTLPTGVLVAIKRAKQGSLQGSHEFKTEIELLSRVHHKNLVSLLGFCYQLGEQMLVY EYIKNGTLTDCISGKSGFKLSWTKRLGIAFDSARGIAYLHELANPPIIHRDIKSTNILLDDQLIAKVADFGLSKPVDNNEVHVSTGVKGTLGYLDPEYFM SGQLTEKSDVYSFGVVMLELVTGRKPIEHGSYVVREVKTAMGNQRTKDSSNLDAILDPALDPGKPLKGLEKFIDLAIRCVEELAANRPTMNEVVKELENI QQLAGFNGNAEMVSTSKTYSETTEGSFYHDYNKNAFFEYSGTFPHSEIELQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232500 [exp]	0	1
					Potri.007G114100 [exp]	2.00	0.9711
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	4.24	0.9710
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.006G058800 [exp]	4.69	0.9539
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.006G089600 [exp]	4.89	0.9680	RBE.2
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	6.32	0.9664
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	6.70	0.9643
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.010G185700 [exp]	6.92	0.9532
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	10.67	0.9624
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	11.22	0.9604
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	12.64	0.9588

Compare expression of checked genes

Potri.004G232500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.