Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07620 366 / 1e-126 Protein kinase superfamily protein (.1) AT5G61570 327 / 2e-111 Protein kinase superfamily protein (.1.2) AT3G24660 170 / 6e-48 TMKL1 transmembrane kinase-like 1 (.1) AT3G51740 150 / 1e-40 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26730 125 / 8e-32 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 124 / 1e-31 RKL1 receptor-like kinase 1 (.1) AT5G58300 120 / 3e-30 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 118 / 1e-29 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 118 / 2e-29 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 117 / 4e-29 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251700 [exp] 164 / 7e-46 AT3G24660 917 / 0.0 transmembrane kinase-like 1 (.1) Potri.016G126300 [exp] 162 / 1e-44 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 155 / 2e-42 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 152 / 4e-41 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.013G158800 [exp] 137 / 3e-36 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 136 / 1e-35 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 132 / 3e-34 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 131 / 4e-34 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 127 / 1e-32 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042988 [exp] 425 / 1e-149 AT5G07620 442 / 7e-156 Protein kinase superfamily protein (.1) Lus10032493 [exp] 425 / 6e-148 AT5G07620 437 / 9e-152 Protein kinase superfamily protein (.1) Lus10011886 [exp] 170 / 3e-49 AT3G24660 649 / 0.0 transmembrane kinase-like 1 (.1) Lus10022818 [exp] 171 / 3e-48 AT3G24660 883 / 0.0 transmembrane kinase-like 1 (.1) Lus10014236 [exp] 160 / 4e-44 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 158 / 3e-43 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 157 / 8e-43 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 156 / 1e-42 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 145 / 3e-39 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10021673 [exp] 128 / 5e-33 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G232800.2 pacid=42796659 polypeptide=Potri.004G232800.2.p locus=Potri.004G232800 ID=Potri.004G232800.2.v4.1 annot-version=v4.1 ATGTCTCATACCAGGCAGGGGCTAAAACTTGTGGTAGGGCTAACTTTAGCTATTTTCTTGTTCGTTGTTGTAGCTGTAGTTTTTGTTTTCTTTAAAAGAA AGGCAGAAAGAAAGACGTGTAATGACATAGAAAACACTGAGGAGAAGCATGGAGATCATGGGGCTGAGACGACAGAGGACCTGGTGACTTTTCAAGGTGG TCAAGACTTAACAATAAGTGACATTCTTGATGCACCAGGAGAAGTTATAGGGAAATCCAACTATGGTACTTTGTACAAGGCCTTGTTGCAGAGGAGTAAC TGTGTGAGGTTGCTTAGGTTCTTGAGGCCAATTTGTACAGCAAGGGTTGAAGATTTTGGTGATGTGGTTCAGTTGCTGGGGTGCATTAGACATCCCAATT TAGTGCCTCTTTTGGGGTTCTATGCAGGGCCTAGAGGTGAAAAGCTCCTTGTTCATCCATTTCTCAGGCGTGGCAACCTGTCTGATTTCATTAGAGATGG GAAGTCTGAGTTTCACAAATGGACCGTCATTTATAAGATATCTATTGGAATAGCCAAAGGATTGGATCATCTTCACGCTGGATTGCAGAAGCCAGTAATT CATGGGAATCTCAAGTCAAAGAATATATTGTTGGATCGCAATTTCCATCCGTGTATCTCCGACTTTGGCCTTCATCTCCTCTTGAATCTTACTGCTGGCC AGGAAATGCTTGAAGCTTCTGCAGCTGAGGGATATAAAGCTCCTGAACTTATCAAAATGAAAGAGGTCACTTTGGAGACTGATATATATAGTCTTGGAAT AATTCTGCTTGAATTACTCTCAGGGAAGGAACCGATCAATGAGAATCCAACCGCTGATGAGGATTTTTATCTGCCAACGTTCATGCGAAATGCAGTCCTT GATCGGAGAATTGCTGATTTATACCATCCAGACATACTTTAG
AA sequence Show only first row Show all	>Potri.004G232800.2 pacid=42796659 polypeptide=Potri.004G232800.2.p locus=Potri.004G232800 ID=Potri.004G232800.2.v4.1 annot-version=v4.1 MSHTRQGLKLVVGLTLAIFLFVVVAVVFVFFKRKAERKTCNDIENTEEKHGDHGAETTEDLVTFQGGQDLTISDILDAPGEVIGKSNYGTLYKALLQRSN CVRLLRFLRPICTARVEDFGDVVQLLGCIRHPNLVPLLGFYAGPRGEKLLVHPFLRRGNLSDFIRDGKSEFHKWTVIYKISIGIAKGLDHLHAGLQKPVI HGNLKSKNILLDRNFHPCISDFGLHLLLNLTAGQEMLEASAAEGYKAPELIKMKEVTLETDIYSLGIILLELLSGKEPINENPTADEDFYLPTFMRNAVL DRRIADLYHPDIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07620			Protein kinase superfamily pro...		Potri.004G232800 [exp]	0	1
AT2G46550			unknown protein		Potri.014G100300 [exp]	2.00	0.8357
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.003G133500 [exp]	8.36	0.7867
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013800 [exp]	9.48	0.8067
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	14.49	0.8320
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	21.56	0.8153
AT5G08570			Pyruvate kinase family protein...		Potri.010G254900 [exp]	24.00	0.7699
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	26.00	0.8219
AT3G12150			unknown protein		Potri.006G058400 [exp]	27.60	0.8104
AT3G11590			unknown protein		Potri.004G199500 [exp]	33.58	0.7544
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	52.49	0.7682

Compare expression of checked genes

Potri.004G232800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.