Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25160 875 / 0 U-box domain-containing protein kinase family protein (.1) AT5G61560 734 / 0 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 734 / 0 U-box domain-containing protein kinase family protein (.1) AT5G61550 664 / 0 U-box domain-containing protein kinase family protein (.1.2) AT5G57035 478 / 4e-157 U-box domain-containing protein kinase family protein (.1) AT2G19410 432 / 3e-139 U-box domain-containing protein kinase family protein (.1) AT5G12000 402 / 3e-129 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 384 / 4e-122 protein kinase family protein (.1) AT2G24370 375 / 1e-117 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 374 / 1e-117 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 438 / 2e-142 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 423 / 1e-136 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 419 / 7e-135 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 414 / 5e-132 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 389 / 2e-123 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 383 / 3e-121 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G160200 [exp] 353 / 2e-108 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.007G001900 [exp] 350 / 2e-108 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 342 / 6e-105 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024212 [exp] 444 / 5e-144 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 428 / 4e-138 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 409 / 1e-130 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 391 / 1e-126 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 387 / 2e-122 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 376 / 3e-121 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 373 / 3e-120 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 378 / 1e-118 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 377 / 2e-118 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 362 / 3e-115 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.004G233000.1 pacid=42795194 polypeptide=Potri.004G233000.1.p locus=Potri.004G233000 ID=Potri.004G233000.1.v4.1 annot-version=v4.1 ATGCATATGGTTATGATGGAGCAAAGTGAGATAATTGAAGAGGAACATGTTCTTGGTTTGCCTCCTTCACCTCCTCTAACTGTTGGGATAGCTATAGATG GAAAAGGAAGCAGCAAGTACTTGGTGCAATGGGCATTGGAGAAGTTCATGCCTCAGGGAAAGGTTGCATTCAAGTTATTACATGTTTGCCCAAAGATCAC AGCAGTCCCTACGCCAATGGGGAATTTTATTCCTATATCACAAGTACGAGATGATGTAGCAGCAGCTTATAAGAAGGAAAAGGAGTGGCAGACACTCCAA ATGCTTCTCCCTTTCAAGAGTATTTGTACCAGGAAAAAGGTGCAAGTAGATATTGTGTTAACTGAATTGGATGATGTGGCGAAGGCAATTGCGGAGGAGG TTGCCAAGTGCAATATCAATAAACTTGTTATAGGAGCAGCTTCTCGTCGCATGTTTACAAGGAAACATAAGGGAAATAATCTGTCCTCAAGAATCTCGGT TTGCGCTCCAAATACTTGCACAGTCTATGCTGTTTCAAAAGGAAAATTGCTATCTATTCGTCCATCTGATTTAGAGACAAGTGGAAGCTTTAGAGATGGT GTCAGTATCACCAGTCGTGCTACTAACTCCTCATCAAGTTCTACTTCGAGCTCTCAAACAGGTTCCAACTCAGTTTCTCCATTCTCTCATTTCCAATCTC CATCCCTGCCAGTTCAGCGATTTCAAGCTCTTTCATCAATAAACCAGGGCTTTCTTTATACCAGAACAAGTTCCTGTGAGACAAATCCGTCAAGAAGCCT GTCTCTGGATTTTGAAGAAAAGGTTATAGGGAGTTCTTGTCCGAGTATTTCAGAAATAGAACACCCAGTCACTCAGAGTTCTAGCTTCAAAAGCTTGTCA ACTGATCACCCGTCATGGAGATCTGATCAAGCTTCAACCTCAGATGTGCTTACAGATTGTTCCTCATCTGACAGCCAGGCAAATATCAACTTTGAGCTAG AAAAGCTGAGGATTGAACTAAGACATGCTCGAGGAATATACGCAGTAGCTCGAAGTGAGACATTTGATGCTTCTCGAAAGTTGAATGATCTTCATAAACG TCGGTTGGAAGAAGCAACAAGACTCCAGGAAATAAAACATGAAGAGGAAAAAGCCTGGGAACTGGCAAGGCAAGAGAGGGGAAGATGTGAAGCTGCAATC CAGAAAGCTGAATGTCTAAGGGAGTGTGCCAAAAGAGAAGCTTCACAAAGGAATGAAGCAGAAATTAAAGCCATGCACGACGCCAAAGAAAAGGAAAAGC TTGAGAAAGCTATTGCTGGTTCTGTACAGCAATACCAGGAGATCACATGGGAAGAGATTGTTTCTGGTACCTTATCGTTCTCAGAAGAGCTTAAGATTGG AATGGGAGCATACGGAACTGTTTATAAATGTAATTTGCACCATACAACCACAGCAGTGAAAGTTCTTCATTCAAAAGAGGACAAAAATTCTAAGCAATTC CAGCAGGAGCTTGAGATCCTGAGTAAAATTCACCATCCACACTTGCTCATTCTTCTTGGCGCTTGTCCTGATCATGGTTGCCTTGTTTATGAGTATATGA AGAATGGGAGCCTGGAGGATAGACTGCAGAGGGTGAACAATACACCCCCTATCCCATGGTTTGAGAGGTATCGAATTGCTTGGGAAATAGCCTCGGCACT TGTTTTTCTTCACAGCTCCAAGCCAAAGCCAATTATTCACCGTGATCTGAAACCAGCCAACATCTTACTTGATCATAACTTTGTGAGCAAGATTGGTGAT GTTGGCCTTTCAACAATGCTTTGTTCAGATGTTTCTTCTTTATCCACCATGTACAAAAACACAGGACCTGTTGGGACATTATGCTACATAGATCCCGAGT ATCAAAGAACTGGGGTGATTTCTCCAAAATCCGATGCTTATGCTTTTGGGATGATAATTTTGCAGTTGCTGACTGCAAAACCAGCTATAGCATTAGCACA TGTGATGGAAACAGCAATGGAGGAGGGTCATTTGGTGGAGATTTTAGATTCAGAGGCCGGGAACTGGCCATTGGAAGAGACAAAAGAATTGGCTATATTG GGACTAAGCTGTACAGAGATGCGACGCAAAGACCGGCCTGATCTGAAAGATGTAGTACTTCCTGCATTGGAGAGATTGAAGAAGGTTGCTCGTAGGGCCC AAGAGTCAGTTTCCAGTCTACAATTGACACCTCCTAAGCACTTAATCTGCCCAATACTTAAGGATTTAATGGATGATCCCTGCGTTGCGGCGGACGGTTA CACTTACGACCGCAAAGCAATACAGAAGTGGCTTGAAGAGAATGACAAGTCACCAATGACGAATTTGCCATTGCCAAATAAGGATCTCTTACCCAGCTAC ACGCTTCTATCTGCTATAATGGAGTGGAAGTCCAAAACCCCATCCGACACCCTCCACATTCGTTCTTCAGGTTAG
AA sequence Show only first row Show all	>Potri.004G233000.1 pacid=42795194 polypeptide=Potri.004G233000.1.p locus=Potri.004G233000 ID=Potri.004G233000.1.v4.1 annot-version=v4.1 MHMVMMEQSEIIEEEHVLGLPPSPPLTVGIAIDGKGSSKYLVQWALEKFMPQGKVAFKLLHVCPKITAVPTPMGNFIPISQVRDDVAAAYKKEKEWQTLQ MLLPFKSICTRKKVQVDIVLTELDDVAKAIAEEVAKCNINKLVIGAASRRMFTRKHKGNNLSSRISVCAPNTCTVYAVSKGKLLSIRPSDLETSGSFRDG VSITSRATNSSSSSTSSSQTGSNSVSPFSHFQSPSLPVQRFQALSSINQGFLYTRTSSCETNPSRSLSLDFEEKVIGSSCPSISEIEHPVTQSSSFKSLS TDHPSWRSDQASTSDVLTDCSSSDSQANINFELEKLRIELRHARGIYAVARSETFDASRKLNDLHKRRLEEATRLQEIKHEEEKAWELARQERGRCEAAI QKAECLRECAKREASQRNEAEIKAMHDAKEKEKLEKAIAGSVQQYQEITWEEIVSGTLSFSEELKIGMGAYGTVYKCNLHHTTTAVKVLHSKEDKNSKQF QQELEILSKIHHPHLLILLGACPDHGCLVYEYMKNGSLEDRLQRVNNTPPIPWFERYRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDHNFVSKIGD VGLSTMLCSDVSSLSTMYKNTGPVGTLCYIDPEYQRTGVISPKSDAYAFGMIILQLLTAKPAIALAHVMETAMEEGHLVEILDSEAGNWPLEETKELAIL GLSCTEMRRKDRPDLKDVVLPALERLKKVARRAQESVSSLQLTPPKHLICPILKDLMDDPCVAADGYTYDRKAIQKWLEENDKSPMTNLPLPNKDLLPSY TLLSAIMEWKSKTPSDTLHIRSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	1.41	0.9346
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	1.73	0.9289
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.012G112000 [exp]	2.00	0.9322	Pt-ERD1.4
AT5G39450			F-box family protein (.1)		Potri.005G067300 [exp]	3.46	0.9173
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	4.00	0.9279	Pt-ATAF1.1
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	7.07	0.9178
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	7.74	0.9150
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	8.24	0.9141
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	9.00	0.9030
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.002G236500 [exp]	9.53	0.9172

Compare expression of checked genes

Potri.004G233000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.