Plant FIBer expression Database

Potri.004G233300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51290 726 / 0 Diacylglycerol kinase family protein (.1)
AT4G21540 72 / 2e-13 SPHK1 sphingosine kinase 1 (.1.2.3)
AT5G23450 71 / 2e-12 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
AT4G21534 68 / 7e-12 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G043500
[exp]
68 / 9e-12 AT4G21540 651 / 0.0 sphingosine kinase 1 (.1.2.3)
Potri.010G255600
[exp]
62 / 9e-10 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
Potri.008G002100
[exp]
61 / 2e-09 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016714
[exp]
727 / 0 AT5G51290 635 / 0.0 Diacylglycerol kinase family protein (.1)
Lus10011246
[exp]
72 / 5e-13 AT4G21540 588 / 0.0 sphingosine kinase 1 (.1.2.3)
Lus10018439
[exp]
67 / 2e-11 AT4G21540 578 / 0.0 sphingosine kinase 1 (.1.2.3)
Lus10010161
[exp]
61 / 2e-09 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
Lus10017366
[exp]
61 / 2e-09 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF00781 DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence
>Potri.004G233300.1 pacid=42795863 polypeptide=Potri.004G233300.1.p locus=Potri.004G233300 ID=Potri.004G233300.1.v4.1 annot-version=v4.1
ATGGAGATAAACAGAGAAGATTATAAATCAGACCCGAAAGTTGTGGAGTCAGGTAATGTCGGAGAAGCAACATCATCAGCATCGTCATCGGTTTTGAAGT
CGGCCCTTTTGTTAGAAAATGTTGGGGATGTAGTTCTCACTCTCAATTCTGATGGGCTGTCTTTGGAATTTCTTGGTACCTCGTATAATGACGGATCAAT
AACTTCTGGAATTAAACCTGTTCAAAAATTTGTAAATGAGATCAGATTTTCTGATGTGTATGGTGTGGAGTTCATAAACTATGGTTTAATTAATGCTTCA
CGTCAATCCAAAGCTGAACGGTGTTTTCAGGGTCGTGCCTCTCATGGATCTGAGATGTATCGCTTTACAGTGCACAGCTTCCAAAAGTCTCGAGGCCAGC
CTTGTCTTTGGGTCCTTGCCGTGTACAGTTTTGGTCACAAGGATTTGCAGACATGTCAGACATGGGTTGATCGAATTAACGCTTCTCTGAACTTAGAAAT
GGGGAGACCAAAGAATCTTCTGGTTTTCATTAATCCAATGAGTGGCAAAGCCAGTGGACGTAGAACCTGGGAAATGGTGGCTCCCATATTCTCGCGTGCT
AAAGTAAAAACAAAGGTGATTGTGACAGAGAGGGCAGGACATGCATTTGATGTGATGGCATCTGCTGCAAACAACGAACTTAAATCATATAATGGTGTTA
TAGCTGTTGGTGGTGATGGTTTCTTCAATGAAATCCTCAATGGGTTTCTTTTATCTAGACATAAAGCTCCTCGGCCACCATCCCCTTCAGATATTGTTCA
TTCTGATCAGAGTAGTGGCAATGGTTTGTTTCACAATCCAAATGAGAGAGTTACTGAAGCTACTTGTCAAAATGAAGACCATTCTCCCCTTTTATCAAAT
TCAGTTTATAATGGAACGAGACAAGCCAATTTCAGAACAGAAGATGGTACTTGCAACATAGGTCAAGATTTTGAGTTTCCCCTTCCAGGTGAACAGTTTA
GATTTGGAATCATTCCTGCTGGCTCAACCGATGCTATTGTGATGTGTACAACTGGAACTCGAGATCCTATAACATCTGCATTGAACATTGTCCTTGGAAA
AAAGGTGTGCCTCGATATAGCTCAAGTTGTGAGATGGAAAACAACAACGGCGTCTGATATCGAACCTTATGTACGCTATGCAGCTTCTTTTGCTGGGTAT
GGGTTTTATGGAGATGTCATTGCTGAAAGTGAAAAATATCGCTGGATGGGCCCCAAACGTTATGATTACGCTGGAACAAAAGTGTTTTTGAGACACAGCT
CATATGAGGCAGAAGTAGCATACATAGAAACTGAATCTGAAAAAACAAATCCAACTGTTGAGAAGGGTCAACTGTTTAGTGGGCTAAGAAAAAGGCAGGG
TCCTAAAAAATCAGAAAGAGTAGTTTGCCGCACAAACTGTGGTGTCTGCAACACGAAATCAGATTATATGTCCAAGAGAAGTCCCTGTTCAACACCTTAT
TCATCTTCGGGTGAAACTAGATGGCTGAGATCTAAAGGTAAATTTCTTAGTGTTGGTGCTGCCATAATTTCCAACAGAAATGAAAGAGCACCTGATGGTT
TGGTGGCCGATGCACATCTTTCAGATGGTTTTCTGCATCTTTTAATGATTAGAGACTGCCCTCACGCTTTATATTTATGGCACCTTACCCAGCTTGCAAA
GAGAGGAGGACAGCCCCTCAATTTTGAATTTGTGGAACATCACAAGACGCCAGCTTTTACGTTTACTTCTTTTGGCAAGCAGAGTGTCTGGAATTTGGAT
GGTGAGCTCTTCCAAGCACACCAGCTTTCTGCACAAGTATTTCGAGGCCTTGTTAGCTTGTTTGCATCCGGCCCTGAAGTTTAG
AA sequence
>Potri.004G233300.1 pacid=42795863 polypeptide=Potri.004G233300.1.p locus=Potri.004G233300 ID=Potri.004G233300.1.v4.1 annot-version=v4.1
MEINREDYKSDPKVVESGNVGEATSSASSSVLKSALLLENVGDVVLTLNSDGLSLEFLGTSYNDGSITSGIKPVQKFVNEIRFSDVYGVEFINYGLINAS
RQSKAERCFQGRASHGSEMYRFTVHSFQKSRGQPCLWVLAVYSFGHKDLQTCQTWVDRINASLNLEMGRPKNLLVFINPMSGKASGRRTWEMVAPIFSRA
KVKTKVIVTERAGHAFDVMASAANNELKSYNGVIAVGGDGFFNEILNGFLLSRHKAPRPPSPSDIVHSDQSSGNGLFHNPNERVTEATCQNEDHSPLLSN
SVYNGTRQANFRTEDGTCNIGQDFEFPLPGEQFRFGIIPAGSTDAIVMCTTGTRDPITSALNIVLGKKVCLDIAQVVRWKTTTASDIEPYVRYAASFAGY
GFYGDVIAESEKYRWMGPKRYDYAGTKVFLRHSSYEAEVAYIETESEKTNPTVEKGQLFSGLRKRQGPKKSERVVCRTNCGVCNTKSDYMSKRSPCSTPY
SSSGETRWLRSKGKFLSVGAAIISNRNERAPDGLVADAHLSDGFLHLLMIRDCPHALYLWHLTQLAKRGGQPLNFEFVEHHKTPAFTFTSFGKQSVWNLD
GELFQAHQLSAQVFRGLVSLFASGPEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51290 Diacylglycerol kinase family p... Potri.004G233300
[exp]
0 1
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Potri.010G122932
[exp]
1.41 0.9220
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.015G028101
[exp]
5.47 0.8976
AT3G14470 NB-ARC domain-containing disea... Potri.003G200500
[exp]
12.48 0.8919
AT2G36360 Galactose oxidase/kelch repeat... Potri.008G024700
[exp]
12.48 0.8561
AT3G14470 NB-ARC domain-containing disea... Potri.003G200080
[exp]
12.64 0.8924
AT5G50780 Histidine kinase-, DNA gyrase ... Potri.012G102800
[exp]
12.68 0.8566
Potri.004G093250
[exp]
13.67 0.8791
Potri.012G060751
[exp]
14.14 0.8565
AT4G18465 RNA helicase family protein (.... Potri.004G052700
[exp]
14.69 0.8760
AT5G24360 AtIRE1b, ATIRE1... ARABIDOPSIS THALIANA INOSITOL ... Potri.002G007201
[exp]
14.96 0.8347

Potri.004G233300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.