Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61520 574 / 0 Major facilitator superfamily protein (.1.2) AT1G11260 549 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT5G26340 545 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 544 / 0 Major facilitator superfamily protein (.1) AT4G02050 540 / 0 STP7 sugar transporter protein 7 (.1) AT1G50310 535 / 0 ATSTP9 sugar transporter 9 (.1) AT3G19930 531 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 530 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT4G21480 516 / 2e-180 STP12 sugar transporter protein 12 (.1) AT1G77210 483 / 2e-167 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120700 [exp] 757 / 0 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G073900 [exp] 557 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 555 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 547 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 547 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 544 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 530 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 524 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 517 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009656 [exp] 688 / 0 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10013441 [exp] 572 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10010534 [exp] 555 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 552 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 540 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10018422 [exp] 528 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10036325 [exp] 516 / 2e-180 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10002597 [exp] 504 / 3e-176 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10040991 [exp] 480 / 7e-166 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10022421 [exp] 474 / 8e-164 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G233500.1 pacid=42795563 polypeptide=Potri.004G233500.1.p locus=Potri.004G233500 ID=Potri.004G233500.1.v4.1 annot-version=v4.1 ATGGCTGTAGGATTTGCTGTAGCAAGTGAAGATGGGCAGTATAATGGTAGGATTACTTCGTTTGTTATCCTGTCTTGTATGGTAGCTTCCATGGGAGGAC TTATTTTTGGTTATGACATTGGAATTTCAGGTGGAGTGACATCCATGGAACCTTTTCTCAAGAAATTCTTCCCAGAAGTGTACACTAGAATGAAGGAAGA TACCAAGATTAGCAACTACTGCAAATTCGATAGCCAGCTTTTGACCTCCTTTACATCATCACTCTATGTTGCTGGCCTTGTCGCTTCCTTCTTTGCCTCG TCAATCACTCGATACTTCGGTCGCAAACCATCAATCCTTGCAGGAGGTGCTGCATTTCTTTCTGGTTCTGCCCTCAATGGGGCAGCGACTAATCTGTACA TGCTAATATTTGGCCGTGTCCTTCTTGGAGTTGGAGTTGGTTTTGCAAACCAGGCGGTTCCCTTGTACCTCTCTGAAATGGCACCTCCAAGATATAGAGG GGCAATCAACAATGGCTTCCAACTCTGCATCGCTATTGGGGTGCTCTCGGCTAACTTCATCAACTTTGGCACTGAGAAGATTGAAGGTGGTTGGGGTTGG CGAATCTCCCTAGCAATGGGGGCAATCCCTGCCACATTCCTAACAATAGGTTCACTTTTCCTACCAGAGACACCCAACAGCCTAATTCAACGCTTCAACG ACGAACAAAAGGCCAAAACCATGCTACAACGCATCCGTGGCACAACCGATGTCGAAGCAGAATTTAATGATCTTATCAAAGCAAGCTTGGTTTCAAAATC CATTGAACATCCAATCAAGAAAATCATACAAAAAAAATATAGACCACAACTAGTCATGGCAATAGCAATACCATTTTTCCAACAAGTAACAGGCATCAAT GTCATTTCATTCTACGCTCCAATCCTCTTCCGAACTATAGGTCTAAGCGAGAGTGTGTCGCTCATCATGTCTGCGCTGATAGCTGGGGTCGTCGGCACTG CTTCAACGTTCCTATCGATGCTCGTAGTGGACAAACTTGGCAGAAGAGTAATGCTCATATGCGGCGGTGTACAAATGTTTGTGTCACAGATTATGATTGG AAGTATCATGGCAGCTCAACTAGGTGATCATGGCAGCATAAACAAAGGGTACGCTTATTTTGTTCTGACTATGATATCCATATATGTATCTGGCTTTGCT TGGTCATGGGGTCCATTGGGATGGCTAGTTCCAAGTGAGATTTTTCCTTTGGAAATTCGATCGGTAGGGCAAAGCATTGTGGTGGCGGTGAATTTCGTCT TCACTTTCATTGTTGCACAGACATTTCTGGCTATGCTTTGCCATTTCAAGTCAGGGATTTTCTTCTTTTTTGGTGGATGGGTGGCAGTGATGACTGCCTT TGTGTATTTGTTGCTGCCTGAGACTAAAAAAGTCCCGATCGAGGTAATGGATAGAGTGTGGAGGGAGCATTGGTTTTGGAAGAGAATTGTAGAGGAATTT GATGACAAGAGTAAAATGGAACCTGCTTGA
AA sequence Show only first row Show all	>Potri.004G233500.1 pacid=42795563 polypeptide=Potri.004G233500.1.p locus=Potri.004G233500 ID=Potri.004G233500.1.v4.1 annot-version=v4.1 MAVGFAVASEDGQYNGRITSFVILSCMVASMGGLIFGYDIGISGGVTSMEPFLKKFFPEVYTRMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFAS SITRYFGRKPSILAGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGW RISLAMGAIPATFLTIGSLFLPETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQKKYRPQLVMAIAIPFFQQVTGIN VISFYAPILFRTIGLSESVSLIMSALIAGVVGTASTFLSMLVVDKLGRRVMLICGGVQMFVSQIMIGSIMAAQLGDHGSINKGYAYFVLTMISIYVSGFA WSWGPLGWLVPSEIFPLEIRSVGQSIVVAVNFVFTFIVAQTFLAMLCHFKSGIFFFFGGWVAVMTAFVYLLLPETKKVPIEVMDRVWREHWFWKRIVEEF DDKSKMEPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61520			Major facilitator superfamily ...		Potri.004G233500 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036000 [exp]	1.00	0.9702
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017166 [exp]	2.82	0.9562
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.010G143900 [exp]	4.24	0.9231
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017232 [exp]	6.48	0.9480
AT1G52855			unknown protein		Potri.011G124800 [exp]	8.36	0.9287
AT1G02260			Divalent ion symporter (.1)		Potri.017G141700 [exp]	14.14	0.9225
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.005G205400 [exp]	15.49	0.9279
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	16.58	0.9078
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151232 [exp]	19.33	0.9218
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G026325 [exp]	21.21	0.9204

Compare expression of checked genes

Potri.004G233500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.