Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TED2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61510 527 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G21580 119 / 4e-31 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT1G49670 87 / 1e-18 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G56460 82 / 1e-17 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G15090 78 / 7e-16 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 71 / 2e-13 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G26320 57 / 4e-09 Zinc-binding dehydrogenase family protein (.1.2) AT5G16980 54 / 3e-08 Zinc-binding dehydrogenase family protein (.1.2) AT5G63620 55 / 4e-08 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G37980 54 / 5e-08 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140600 [exp] 555 / 0 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.004G036100 [exp] 127 / 3e-34 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.009G103000 [exp] 110 / 2e-26 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.019G065700 [exp] 94 / 1e-21 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G391100 [exp] 77 / 8e-16 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 73 / 2e-14 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 69 / 8e-13 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G342800 [exp] 62 / 1e-10 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 57 / 3e-09 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009018 [exp] 495 / 3e-173 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10009658 [exp] 387 / 8e-137 AT5G61510 403 / 5e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10018450 [exp] 122 / 4e-32 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10009657 [exp] 118 / 7e-32 AT5G61510 127 / 6e-35 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10011233 [exp] 119 / 4e-31 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10028988 [exp] 95 / 7e-22 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027904 [exp] 94 / 5e-21 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 94 / 6e-21 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10003691 [exp] 91 / 2e-20 AT3G56460 504 / 1e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10003495 [exp] 75 / 9e-15 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G233800.2 pacid=42793914 polypeptide=Potri.004G233800.2.p locus=Potri.004G233800 ID=Potri.004G233800.2.v4.1 annot-version=v4.1 ATGGTTAAATCTATCAGGGTTCATGAGCTTGGTGGACCTGAGGTCCTGAAGTGGGAAGATGTGGAGATAAGAGAGCCAGGTGAGGGTGAGATACGCGTGA AGAACAAGGCCATTGGGCTTAATTTCATTGATGTCTACTTCCGCAAAGGAGTTTATAAGGCTTCCACAATGCCCTTCACCCCAGGTATGGAGGCTGTTGG AGAAGTGATAGCTCTGGGCCCTGGAGTTACAGATAGGAAAGTTGGAGAAGTTGTAGGTTATGCTGGTGGTCCTATGGGTTCATATACTGAAGAGCAGATC CTTCCTGCAAACAAGGTTGTGCCTGTCCCGCCTTCTATTAGTCCTTCAGTAGCAGCATCTGTGATGCTTAAAGGCATGACTGCTCAGTTCTTACTCCGTC GTTGCTTCAAGGTTGAACCAGGGCACACTATCCTTGTTCAGGCTGCAGCTGGTGGAGTCGGTTCTCTGTTATGTCAGTGGGCAAATTCTCTTGGTGCCAC TGTCATAGGTACTGTCTCAACCAAGGAGAAGGCAGCACAAGCCAAGGACGATGGATGTCACCATGTTATAATTTATAAAGAGGAAGATTTTGCTGCCCGT GTCAATGAGATAACATCAGGAAATGGCGTCGATGTTGTCTACGATTCCGTGGGGAAAGATACCTTTCAGGGCTCATTGGCATGCTTAAAGACTCGTGGCT ACATGGTTTGTTTTGGACAGTCATCTGGGACACCAGATCCGTTCCCACTGTCAGTGCTTGCCCCAAAATCACTGTTCTTGACAAGGCCTTCCCTCATGCA ATACACTGCAACCCGGGGTGAGCTGCTAGAAACTGCAGGGGAGGTATTTGCCAACATTGCATCTGGCGTGTTGCGGGTTCGTGTGAATCACACATACCCT CTATCTCAGGCAGCACAGGCACATGCAGATCTGGAGAGTCGAAAAACATCTGGGTCAGTTGTATTGTTACCTTAA
AA sequence Show only first row Show all	>Potri.004G233800.2 pacid=42793914 polypeptide=Potri.004G233800.2.p locus=Potri.004G233800 ID=Potri.004G233800.2.v4.1 annot-version=v4.1 MVKSIRVHELGGPEVLKWEDVEIREPGEGEIRVKNKAIGLNFIDVYFRKGVYKASTMPFTPGMEAVGEVIALGPGVTDRKVGEVVGYAGGPMGSYTEEQI LPANKVVPVPPSISPSVAASVMLKGMTAQFLLRRCFKVEPGHTILVQAAAGGVGSLLCQWANSLGATVIGTVSTKEKAAQAKDDGCHHVIIYKEEDFAAR VNEITSGNGVDVVYDSVGKDTFQGSLACLKTRGYMVCFGQSSGTPDPFPLSVLAPKSLFLTRPSLMQYTATRGELLETAGEVFANIASGVLRVRVNHTYP LSQAAQAHADLESRKTSGSVVLLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61510			GroES-like zinc-binding alcoho...		Potri.004G233800 [exp]	0	1	Pt-TED2.2
AT3G53990			Adenine nucleotide alpha hydro...		Potri.016G104600 [exp]	1.00	0.8926
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	9.59	0.7885
AT2G48020			Major facilitator superfamily ...		Potri.002G212900 [exp]	11.74	0.8483
AT4G14930			Survival protein SurE-like pho...		Potri.010G088000 [exp]	17.20	0.7209
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033000 [exp]	18.00	0.8173
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	18.02	0.8151
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	21.21	0.8137	MYB194
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.003G178200 [exp]	24.73	0.8029	GR.1
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022500 [exp]	26.53	0.7975
AT2G30150			UDP-Glycosyltransferase superf...		Potri.001G281800 [exp]	26.83	0.7883

Compare expression of checked genes

Potri.004G233800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.