Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45280 567 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 560 / 0 Pectinacetylesterase family protein (.1.2) AT4G19420 520 / 0 Pectinacetylesterase family protein (.1.2) AT2G46930 416 / 3e-144 Pectinacetylesterase family protein (.1) AT1G57590 413 / 1e-142 Pectinacetylesterase family protein (.1) AT3G62060 408 / 4e-141 Pectinacetylesterase family protein (.1) AT5G26670 405 / 7e-140 Pectinacetylesterase family protein (.1.2) AT3G05910 402 / 5e-139 Pectinacetylesterase family protein (.1.2) AT3G09410 384 / 2e-131 Pectinacetylesterase family protein (.1.3) AT5G23870 380 / 6e-130 Pectinacetylesterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046200 [exp] 709 / 0 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 508 / 2e-180 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 428 / 3e-148 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.005G001500 [exp] 419 / 1e-145 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 413 / 6e-143 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 403 / 7e-139 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 395 / 4e-136 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 372 / 3e-127 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 369 / 2e-126 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033301 [exp] 625 / 0 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034762 [exp] 515 / 0 AT4G19410 440 / 1e-154 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 509 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 508 / 2e-180 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 488 / 2e-172 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 472 / 1e-164 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 438 / 2e-153 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10009966 [exp] 407 / 2e-140 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 406 / 2e-140 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 402 / 1e-138 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.004G233900.3 pacid=42796656 polypeptide=Potri.004G233900.3.p locus=Potri.004G233900 ID=Potri.004G233900.3.v4.1 annot-version=v4.1 ATGGCTGGTTCAAGATTAGGCCAATGGCCGTGTCTTGTTGTTTGCATACTGATATTGCTCAAGGCAGAAGGAGCTAGCATTCCCATTACTATTGTCGAGA CTGCTGTTTCAAGCGGAGCTGTTTGCTTAGATGGGAGTCCGCCAGGTTACCACTTTGACAAAGGATCTGGTTCTGGGATTGATAACTGGTTGGTTCACAT GGAGGGAGGAGGATGGTGTGAGAGTGTTGAGTCCTGTGTATCTCGTAGGGACACTTTCAGGGGTTCTTCATCGAAAATGGAGAAGACAATGGGGTTCTCT GGCATACTGGGCAGCAAGCAAGCAGCTAATCCTGACTTCTATAACTGGAATAGAATCAAAGTCAGATACTGTGATGGTTCATCATTTACTGGTGATGTCG AAGCTGTCGATCCGGAAACTAAGCTTTACTTCAGGGGAGAGAGGGTTTGGCAGGCTGTAATTGATGAACTATTGGCGAAAGGAATGCAAAATGCTCGAAA TGCTATTCTTTCCGGATGTTCTGCTGGTGGATTGGCTGCTATTTTGCATTGTGATAAATTCCAATCCCTCCTGCCTGCAACTGCTAGAGTAAAATGTGTT TCTGATGCTGGTTATTTTATTCACGGGACGGACATTTCTGGAGGGTCTCGAATTGAATCCTTCTTCGGTCAAGTCGTTAAAACTCATGGATCAGCAAAGA ATTTGCCTGCATCATGCACTTCAAAAATGAATCCGGAGTTGTGTTTCTTCCCACAATATGTGGCGCAGACTATGCGAACACCACTTTTCATCATAAACTC AGCTTACGATTCCTGGCAGATAAAAAACATTCTTGCACCAACAGCTGTTGATTCCAAAAAAGAATGGAAGGACTGCAAGCTTGATTTGAAAAAATGCTCA GCTAGTCAACTCCAGACCGTGCAAGATTACAGGACACAATTCTTAAAAGCAGTGGATACTGGACTTGGCAGTTCTTCAACAAGAGGATTGTGGATAGATT CTTGCTATGCTCACTGCCAATCTGGGTCGGTATCTACCTGGTTAAACGATAAATCTCCCGAAGTGGGCGATACGAAAATGGGAAAGGCTGTTGGAGATTG GTTCTACGACCGAAGTGCCATGGAAAAAATCGATTGCCCTTACTCTTGCAACCCTACTTGTGTCAGTGTTGATTCTGAATCGTAA
AA sequence Show only first row Show all	>Potri.004G233900.3 pacid=42796656 polypeptide=Potri.004G233900.3.p locus=Potri.004G233900 ID=Potri.004G233900.3.v4.1 annot-version=v4.1 MAGSRLGQWPCLVVCILILLKAEGASIPITIVETAVSSGAVCLDGSPPGYHFDKGSGSGIDNWLVHMEGGGWCESVESCVSRRDTFRGSSSKMEKTMGFS GILGSKQAANPDFYNWNRIKVRYCDGSSFTGDVEAVDPETKLYFRGERVWQAVIDELLAKGMQNARNAILSGCSAGGLAAILHCDKFQSLLPATARVKCV SDAGYFIHGTDISGGSRIESFFGQVVKTHGSAKNLPASCTSKMNPELCFFPQYVAQTMRTPLFIINSAYDSWQIKNILAPTAVDSKKEWKDCKLDLKKCS ASQLQTVQDYRTQFLKAVDTGLGSSSTRGLWIDSCYAHCQSGSVSTWLNDKSPEVGDTKMGKAVGDWFYDRSAMEKIDCPYSCNPTCVSVDSES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45280			Pectinacetylesterase family pr...		Potri.004G233900 [exp]	0	1
AT5G42110			unknown protein		Potri.011G151900 [exp]	2.44	0.8245
AT3G48550			unknown protein		Potri.012G097901 [exp]	9.64	0.8067
AT5G50335			unknown protein		Potri.012G094000 [exp]	11.48	0.7704
AT4G33800			unknown protein		Potri.001G292100 [exp]	12.96	0.8116
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.005G122200 [exp]	16.09	0.7584
					Potri.002G252400 [exp]	24.57	0.8044
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G238300 [exp]	24.73	0.7734
					Potri.006G179001 [exp]	27.49	0.7255
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	29.79	0.7908
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	30.41	0.7927	ACR4.3

Compare expression of checked genes

Potri.004G233900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.