Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 598 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 496 / 8e-176 Pectinacetylesterase family protein (.1.2) AT5G45280 474 / 7e-167 Pectinacetylesterase family protein (.1.2) AT5G26670 437 / 4e-152 Pectinacetylesterase family protein (.1.2) AT3G62060 431 / 1e-149 Pectinacetylesterase family protein (.1) AT3G05910 429 / 1e-148 Pectinacetylesterase family protein (.1.2) AT2G46930 414 / 8e-143 Pectinacetylesterase family protein (.1) AT1G57590 415 / 1e-142 Pectinacetylesterase family protein (.1) AT5G23870 397 / 4e-136 Pectinacetylesterase family protein (.1.2.3) AT3G09410 378 / 1e-128 Pectinacetylesterase family protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233900 [exp] 508 / 3e-180 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 490 / 4e-173 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 452 / 6e-158 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 448 / 3e-156 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 437 / 3e-151 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 414 / 1e-142 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 403 / 2e-138 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 400 / 1e-137 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 394 / 2e-135 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033305 [exp] 612 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 612 / 0 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 598 / 0 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 581 / 0 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 536 / 0 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 491 / 1e-173 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 431 / 1e-149 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 431 / 3e-149 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 419 / 1e-144 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10034762 [exp] 406 / 1e-140 AT4G19410 440 / 1e-154 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.004G234100.1 pacid=42794599 polypeptide=Potri.004G234100.1.p locus=Potri.004G234100 ID=Potri.004G234100.1.v4.1 annot-version=v4.1 ATGTGCAGAATGGTAGATTCAAGATTAGGCCACTGGTTAAAACTCCTGGTTTCTCTGATGTTATTGCTGAAAACACAAGGGCTTTATGTAGGAATTACTT ACGTAAAGAGTGCAGTGGCCAAAGGAGCTGTTTGTTTGGATGGAAGCCCGCCGGCTTACCACTGGGATAAAGGGTTTGGTACAGGCATTAATAGTTGGTT GATACATTTTGAGGGAGGAGGATGGTGCAACAATGTCACGAGCTGCCTTTCCCGTAAGAAAACTCATTTAGGTTCATCGAAGCTAATGGGACAGCAAATT GCTTTCTCTGGGATTATGAACAACAAGCGGCCGTTTAATCCAGATTTTTACAATTGGAATAGAGTTAAGATCAGATACTGTGATGGGTCATCGTTTACCG GTGATGTGCAGGCAGTCAATCCTGCTACTAATCTTCACTTCAGAGGAGCTAGGATTTGGCTTGCTGTCATTGAGGATCTATTACCAAAAGGATTGAAAAA TGCTGAAAACGCTCTTCTTTCTGGCTGTTCAGCTGGTGGATTGGCTTCCATTTTGCATTGCGACAGTTTCCGTGCACTCCTACGTATGGGCACTAAAGTA AAATGCCTTTCAGATGCTGGTTATTTTATCAAAGTGAAGGATGTCTCCGGAGCCCCGCATGTGCAGACCTACTTTAATGAAATTGTGACATTACATGGAT CTGCAAAAAATCTGCCCCTGTCCTGCACTTCAGTGCTGAAACCCTCATTCTGTTTCTTCCCACAATATGTGGCTCCACAAGTACGAACGCCACTTTTCAT TCTTAATGCAGCCTACGATTCATGGCAGATAAGAAACATTTTGGCACCGAGTATTGCTGATCCCCTTGGCGTCTGGAAGAGCTGCAAGCTAGACATAAAC AACTGCTCACCTCTTCAACTCAAATCTATGCAAGATTTTAGGTTGCAGTTTCTGAATGCATTGAATAAATCAACCAACTCTTCATCTAGAGGATTGTATA TAGACTCTTGCTATGCCCACTGCCAAACTGAAACACAAGAGAAATGGTTCATGGAAGACTCCCCAGTGCTTGGTAAAAAGAAAATTGCAAAGGCAGTTGG AGATTGGTTTTATGATCGGAATCCATTCCAAAAGATTGATTGTCCTTACCCTTGCAATCCATCTTGCCAAAACAGTGGTTTGGCTCCACCAGACAACCCA GAAAAGAAACCGCCAAACGGGTCTGCAGCATCAGTCAATATGAGTACGTTATTGTGCGGGTTACTAATGCTAATGGGAGTGATGTTGCCATGA
AA sequence Show only first row Show all	>Potri.004G234100.1 pacid=42794599 polypeptide=Potri.004G234100.1.p locus=Potri.004G234100 ID=Potri.004G234100.1.v4.1 annot-version=v4.1 MCRMVDSRLGHWLKLLVSLMLLLKTQGLYVGITYVKSAVAKGAVCLDGSPPAYHWDKGFGTGINSWLIHFEGGGWCNNVTSCLSRKKTHLGSSKLMGQQI AFSGIMNNKRPFNPDFYNWNRVKIRYCDGSSFTGDVQAVNPATNLHFRGARIWLAVIEDLLPKGLKNAENALLSGCSAGGLASILHCDSFRALLRMGTKV KCLSDAGYFIKVKDVSGAPHVQTYFNEIVTLHGSAKNLPLSCTSVLKPSFCFFPQYVAPQVRTPLFILNAAYDSWQIRNILAPSIADPLGVWKSCKLDIN NCSPLQLKSMQDFRLQFLNALNKSTNSSSRGLYIDSCYAHCQTETQEKWFMEDSPVLGKKKIAKAVGDWFYDRNPFQKIDCPYPCNPSCQNSGLAPPDNP EKKPPNGSAASVNMSTLLCGLLMLMGVMLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19420			Pectinacetylesterase family pr...		Potri.004G234100 [exp]	0	1
AT5G23870			Pectinacetylesterase family pr...		Potri.015G145400 [exp]	14.83	0.8172
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.016G013900 [exp]	40.42	0.7901
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.003G015000 [exp]	57.48	0.7708
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.002G165500 [exp]	124.11	0.7495
					Potri.002G257600 [exp]	130.47	0.7723
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.010G051500 [exp]	139.59	0.7784	ARP3.2
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.001G355900 [exp]	184.02	0.7601
AT5G51280			DEAD-box protein abstrakt, put...		Potri.005G047301 [exp]	211.28	0.7541
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.001G261000 [exp]	249.20	0.7514

Compare expression of checked genes

Potri.004G234100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.