Plant FIBer expression Database

Potri.004G234300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45310 230 / 7e-73 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001616
[exp]
244 / 1e-78 AT5G45310 185 / 5e-56 unknown protein
Lus10022973
[exp]
244 / 2e-78 AT5G45310 189 / 1e-57 unknown protein
Lus10022975
[exp]
110 / 1e-26 AT4G35380 176 / 4e-48 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10010582
[exp]
45 / 3e-06 ND 41 / 2e-05
PFAM info
Representative CDS sequence
>Potri.004G234300.5 pacid=42794139 polypeptide=Potri.004G234300.5.p locus=Potri.004G234300 ID=Potri.004G234300.5.v4.1 annot-version=v4.1
ATGGATCCAGTGGTGCTATTTCCGGAATCAATGGATACTGCTTTAATCTTGGTGACAAAGCCTTTCTCATTATGCAAATTGGCCATCATGTTTCCTCTCA
AAATCATGTTTATTGCGATTCACACTTGGATAGAGCTGCTGGTAGTCACAATCAATTTTCATCTAAATATGTTCTGGAAGGCCATGGTTTGCTTTGTCGG
TCTTATACTTTTTCCTGGTCGGGTTTTGACTGCCTTACCAAGGGAGAAGATGCTGGAAGACCATCTGCTTCGGATGCAGATCGAATTGGATAATCTTATT
TGGGAAAGGAAGGAACTTCATGGCCAGCTCCAGACAGCAGATAAAGAAATTAGAATTTTGGAATCAATGTTAGCCGAAGTTGAAGAGGAAAATGACAAGG
CCATTGCCAAAATTGAATTTCTAGAGGTTGAGTTGCAGGATCTGAAGGCTGAAAATGCTCAGCTGAAGGAAAATCTGGGTAAAGGTTGTTGGAGCTTTAA
AGATCATGATCACAGAGACAATGGCCATAATATCATTGCTGACAACTATGGCATTTCCTCTGGTATCCAGTCATGGAAATCTGACTATAAAGGAACTGAA
ATCCTATTCCAAGACCTGATGATACAGAGAGAGGGATGGGAGGGCGACTGCAAGAGCAAAGCAGAATTTGCCAACTGCTTGAAAGCTGAATCCACAGATA
GTGTGCCCATCCACCAAGTTACGACGGGTGTTTTCTCAAGGAATTTAGACATTAATGAGGCTCTGATACTTAGCAGGGAGGCTGCACTTTCTCAGTCTCT
TTTCAGTGCCGTGCTATCACTTTTGGTAGGAATGATCATCTGGGAAGCTGAAGATCCTTGCATGCCCCTTGTGGTAGCACTCTTCACTGTTGTTGGCATG
TCACTGAAAAGTGTGGTTCAATTTTTCTCCACTATAAAGAACAAACCTGCTTCTGATGCAGTTGCTCTCCTAAGCATCAACTGGTTCATACTTGGCACAC
TTACTTATCCAACACTGCCAAGGGTAGCCCATATTTTGGCTCCATGGGCCTTGAGTTTATTGGACCGGACAGTGAGCTGGCTTGGTATCTCTTCCTGTTA
A
AA sequence
>Potri.004G234300.5 pacid=42794139 polypeptide=Potri.004G234300.5.p locus=Potri.004G234300 ID=Potri.004G234300.5.v4.1 annot-version=v4.1
MDPVVLFPESMDTALILVTKPFSLCKLAIMFPLKIMFIAIHTWIELLVVTINFHLNMFWKAMVCFVGLILFPGRVLTALPREKMLEDHLLRMQIELDNLI
WERKELHGQLQTADKEIRILESMLAEVEEENDKAIAKIEFLEVELQDLKAENAQLKENLGKGCWSFKDHDHRDNGHNIIADNYGISSGIQSWKSDYKGTE
ILFQDLMIQREGWEGDCKSKAEFANCLKAESTDSVPIHQVTTGVFSRNLDINEALILSREAALSQSLFSAVLSLLVGMIIWEAEDPCMPLVVALFTVVGM
SLKSVVQFFSTIKNKPASDAVALLSINWFILGTLTYPTLPRVAHILAPWALSLLDRTVSWLGISSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45310 unknown protein Potri.004G234300
[exp]
0 1
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Potri.004G013200
[exp]
1.00 0.7181 Pt-ATGLX1.1
AT3G16990 Haem oxygenase-like, multi-hel... Potri.008G106600
[exp]
6.70 0.6585 Pt-PM36.1
AT4G16160 ATOEP16-2, ATOE... Mitochondrial import inner mem... Potri.008G107200
[exp]
8.00 0.6384
AT1G29750 RKF1 receptor-like kinase in flower... Potri.004G063500
[exp]
10.86 0.6714 RKF1.1
AT2G30600 BTB/POZ domain-containing prot... Potri.002G010100
[exp]
13.41 0.6309
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
16.24 0.6440
AT4G36600 Late embryogenesis abundant (L... Potri.005G122400
[exp]
19.79 0.6414
AT4G06599 ubiquitin family protein (.1) Potri.004G219300
[exp]
21.33 0.6501
AT1G75750 GASA1 GAST1 protein homolog 1 (.1.2) Potri.005G239100
[exp]
23.83 0.6530 Pt-GASA1.2
AT1G24100 UGT74B1 UDP-glucosyl transferase 74B1 ... Potri.015G071900
[exp]
24.24 0.6053

Potri.004G234300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.