Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45320 173 / 6e-55 unknown protein AT4G26490 69 / 3e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G26350 64 / 6e-12 unknown protein AT2G35960 46 / 4e-06 NHL12 NDR1/HIN1-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046000 [exp] 307 / 1e-107 AT5G45320 164 / 3e-51 unknown protein Potri.010G049000 [exp] 60 / 1e-10 AT3G26350 189 / 1e-56 unknown protein Potri.011G165500 [exp] 58 / 4e-10 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 57 / 9e-10 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037259 [exp] 222 / 5e-74 AT5G45320 182 / 2e-58 unknown protein Lus10035675 [exp] 198 / 4e-65 AT5G45320 174 / 9e-56 unknown protein Lus10011406 [exp] 59 / 4e-10 AT3G26350 209 / 5e-60 unknown protein Lus10006464 [exp] 54 / 1e-08 AT3G26350 208 / 2e-63 unknown protein Lus10015606 [exp] 49 / 8e-07 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032906 [exp] 48 / 1e-06 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043410 [exp] 42 / 9e-05 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 41 / 0.0003 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G234500.1 pacid=42794166 polypeptide=Potri.004G234500.1.p locus=Potri.004G234500 ID=Potri.004G234500.1.v4.1 annot-version=v4.1 ATGACCAAGAATTTTCTATCCACTCCCCCACCTCGAACCCATTTTCTATGGTGGTTTGCTGCTATCTTTTGTGCCATCCTCACCATGGCAGTAATCATTG CCGGCATCGTCATCTTCATTGGCTACATGGTAATTCACCCAAGAGTTCCAGTCATCAGCGTTGTCAGTGCTTATCTCCCTCATTTCAACTACGACGGAGC CGGGGTACTTGTAACGCAAGTAAACATCCTGGTAAGGTCGAAGAATGACAACATGAAGGCCCATGCCAGGTTCTCAAATTTCAATCTTGAACTGTTCTTT GATGGGAATAGGATAGCAGTATTGTCAACTGCGACTCCATATGAGGTGAAGAAGAATAGTTCAGTTGATTTTAACTATGAATACACCTCGGATCCTATAC CATTAAATCCTATGCAAATGAATCATGTGGATGAATCCCTTAAAAAGGATGAGGTGAGTTTTGAGTTGAAAGGAGGTGTAAGAACTCAGTGGAGAGTTGG GGTTCTTGGCTCTGTTAAGTTCTTGTGTCACTTGAATTGTCAACTACAATTTCGCCCATCAAATGGAAGCTACATAACAAGACGTTGCTCCTCCAGGTCT AAGTGA
AA sequence Show only first row Show all	>Potri.004G234500.1 pacid=42794166 polypeptide=Potri.004G234500.1.p locus=Potri.004G234500 ID=Potri.004G234500.1.v4.1 annot-version=v4.1 MTKNFLSTPPPRTHFLWWFAAIFCAILTMAVIIAGIVIFIGYMVIHPRVPVISVVSAYLPHFNYDGAGVLVTQVNILVRSKNDNMKAHARFSNFNLELFF DGNRIAVLSTATPYEVKKNSSVDFNYEYTSDPIPLNPMQMNHVDESLKKDEVSFELKGGVRTQWRVGVLGSVKFLCHLNCQLQFRPSNGSYITRRCSSRS K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45320			unknown protein		Potri.004G234500 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.003G002800 [exp]	5.29	0.7939	PME2.15
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.003G002650 [exp]	6.70	0.8071
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.011G046700 [exp]	15.42	0.7382	NAC002
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.015G147000 [exp]	38.88	0.7276
					Potri.004G221400 [exp]	41.06	0.7843
					Potri.001G444350 [exp]	44.74	0.7643
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	48.46	0.7564
AT2G42490			Copper amine oxidase family pr...		Potri.012G084400 [exp]	54.40	0.5978
AT5G02140			Pathogenesis-related thaumatin...		Potri.010G200800 [exp]	85.73	0.7173
AT1G62045			unknown protein		Potri.011G004400 [exp]	104.76	0.7082

Compare expression of checked genes

Potri.004G234500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.