Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) AT5G13720 184 / 3e-57 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057300 [exp] 189 / 3e-59 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1) Potri.014G039000 [exp] 143 / 3e-41 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037258 [exp] 283 / 2e-96 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 265 / 8e-81 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019743 [exp] 190 / 2e-59 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10016380 [exp] 182 / 9e-56 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 176 / 1e-53 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10018793 [exp] 152 / 4e-45 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1) Lus10032866 [exp] 147 / 2e-42 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [poplar] [flax] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Potri.004G234600.1 pacid=42795903 polypeptide=Potri.004G234600.1.p locus=Potri.004G234600 ID=Potri.004G234600.1.v4.1 annot-version=v4.1 ATGAACCCTTCCCGACCCATGATTTCAAGACCCATCAAAATACCACCTTTCGTGCTCAAGACTTGTAATTTGAGTCCATATTCTAAAAGGGTATCTGGGT TTAGCCCACATGGACATGGTATTAGATTCTCACCTGCTGTGACCAAATGTTCAAGAGCTCGTGATGTTCATTTAGCAGCAGCAGAAGCTACACAATCTTC TTGTTCTTCATCTCGTGCATCCCCTGTAATTGCATCAAAGATACTCGACTTCGAATCTATAGAGGAGAACATAGAGAAGGTTATTTATCGATGTCGGTTC TTGGCGATTCTTGGGGTTTTGGGCTCTATGGTTGGATCATTTCTCTGTTTCATAAAGGGCTGCACTTATGTTGGGTCAGCTTTCATGCAATACCTCGTCA ATCGTAGCAAAGTGATTATATTGCTGGTCGAGGCCATAGATGTCTATCTTTTGGGAACAGTGATGCTAGTCTTTGGAATGGGTCTATATGAACTCTTTGT TAGCAATCTTGACCTTGCAAAGCAGGTGTCAACGGGGAAAGCACCAAACAGGTCAAGTTTATTTGGCTTATTTGCCTTGAAGGAACGACCGAAATGGTTA GAAGTGAAAACTGTTAATGAGCTGAAAACCAAGCTTGGCCACGTCATAGTAATGCTTCTTCTGATCGGCTTCTTTGAAAAGAGTAAGACGGCAATCATAC TCTCTCCCATTGATTTACTTTGCTTCTCAGCTTCTGTCTTCCTTTGCTCTGGTGGCCTCTACTTGTTATCTAAGCTTGGCGACACCAAATGA
AA sequence Show only first row Show all	>Potri.004G234600.1 pacid=42795903 polypeptide=Potri.004G234600.1.p locus=Potri.004G234600 ID=Potri.004G234600.1.v4.1 annot-version=v4.1 MNPSRPMISRPIKIPPFVLKTCNLSPYSKRVSGFSPHGHGIRFSPAVTKCSRARDVHLAAAEATQSSCSSSRASPVIASKILDFESIEENIEKVIYRCRF LAILGVLGSMVGSFLCFIKGCTYVGSAFMQYLVNRSKVIILLVEAIDVYLLGTVMLVFGMGLYELFVSNLDLAKQVSTGKAPNRSSLFGLFALKERPKWL EVKTVNELKTKLGHVIVMLLLIGFFEKSKTAIILSPIDLLCFSASVFLCSGGLYLLSKLGDTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19390			Uncharacterised protein family...		Potri.004G234600 [exp]	0	1
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	3.00	0.9496
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.006G085200 [exp]	5.74	0.9166
AT2G02740		WHY3, ATWHY3, P...	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.008G149100 [exp]	8.48	0.9395
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	9.32	0.9448
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	10.00	0.9483
AT5G22210			unknown protein		Potri.009G162200 [exp]	10.39	0.9305
AT3G60590			unknown protein		Potri.014G061000 [exp]	13.85	0.9373
AT5G03560			Tetratricopeptide repeat (TPR)...		Potri.016G096900 [exp]	14.86	0.9274
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	15.00	0.9384
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	15.23	0.9190

Compare expression of checked genes

Potri.004G234600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.