Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1) AT4G19370 109 / 7e-30 Protein of unknown function (DUF1218) (.1) AT4G21310 49 / 2e-07 Protein of unknown function (DUF1218) (.1) AT5G17210 47 / 1e-06 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048300 [exp] 66 / 3e-13 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033286 [exp] 155 / 3e-48 AT4G19370 119 / 6e-34 Protein of unknown function (DUF1218) (.1) Lus10034746 [exp] 126 / 6e-37 AT1G31720 103 / 7e-28 Protein of unknown function (DUF1218) (.1) Lus10035672 [exp] 112 / 9e-31 AT4G19370 104 / 9e-28 Protein of unknown function (DUF1218) (.1) Lus10037256 [exp] 105 / 6e-28 AT1G31720 94 / 2e-23 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 62 / 6e-12 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Lus10038567 [exp] 44 / 2e-05 AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) Lus10018386 [exp] 43 / 4e-05 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10007626 [exp] 43 / 4e-05 AT4G21310 252 / 6e-87 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.004G235000.1 pacid=42794284 polypeptide=Potri.004G235000.1.p locus=Potri.004G235000 ID=Potri.004G235000.1.v4.1 annot-version=v4.1 ATGGCTAGACATCAATATGGGTTCCTGCTAATTTTCTCCATCATCGTCTCCCTCTCCCTCTCCCTCGTCTCTTTTGTTTCTTGTGTTCTTGCTGAGTCCA AGAAAGCCAAGAAGGAGGATCTCAAATTGAGCAATAAACTGTGTGAATTGCCCCAAAGCCATGCATTTGGCTTTGGTATTGCAGCTCTGATATGGCTAGT CATCGCTCAAGTCATTGGGAACGTGATGATTTGCACCCTTTTTCGGCACAGAGAGAACAGTAACAGCTCCAAGGCTAAGAAACCAAAGATTGCCACGGGA CTCCTGGTTTTCTCCTGGATCAGCTTTGGAATTGCAGTTGCTTTACTAAGCACAGCCACAAGCATGAGCAGGAGGCAAGCCTATGGGAAAGGATGGTTGG ATCATGAATGCTACGTGGTCAGAGATGGAGTGTTTATTGGCTCAGGGGTCCTAATCTTGGTTACCACAGCCACCTTACTTGGTTCAGCAATCTTTACACT TAGACAAGCAGAAGCAGAACAAGGTAGAAAAATGCATGCACAAGTTGGATAA
AA sequence Show only first row Show all	>Potri.004G235000.1 pacid=42794284 polypeptide=Potri.004G235000.1.p locus=Potri.004G235000 ID=Potri.004G235000.1.v4.1 annot-version=v4.1 MARHQYGFLLIFSIIVSLSLSLVSFVSCVLAESKKAKKEDLKLSNKLCELPQSHAFGFGIAALIWLVIAQVIGNVMICTLFRHRENSNSSKAKKPKIATG LLVFSWISFGIAVALLSTATSMSRRQAYGKGWLDHECYVVRDGVFIGSGVLILVTTATLLGSAIFTLRQAEAEQGRKMHAQVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31720			Protein of unknown function (D...		Potri.004G235000 [exp]	0	1
AT3G51130			unknown protein		Potri.007G015800 [exp]	2.44	0.8281
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.001G175000 [exp]	12.96	0.8390
AT5G62580			ARM repeat superfamily protein...		Potri.015G069200 [exp]	22.89	0.8378
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	23.45	0.8129
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	26.32	0.8098
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	34.49	0.7850	GLP10.2
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	38.78	0.8096
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	53.56	0.7956
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.005G038800 [exp]	55.85	0.8015
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017601 [exp]	60.09	0.7431

Compare expression of checked genes

Potri.004G235000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.