Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45330 229 / 6e-68 DCP5-L decapping 5-like (.1) AT1G26110 157 / 3e-41 DCP5 decapping 5 (.1.2) AT4G19360 94 / 3e-22 SCD6 protein-related (.1.2) AT4G19340 59 / 9e-10 SCD6 protein-related (.1) AT4G19260 59 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19330 57 / 3e-08 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114900 [exp] 176 / 7e-48 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.010G131400 [exp] 173 / 7e-47 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.004G104000 [exp] 166 / 2e-44 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.017G111500 [exp] 164 / 8e-44 AT1G26110 208 / 2e-59 decapping 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034747 [exp] 175 / 4e-48 AT1G26110 229 / 5e-68 decapping 5 (.1.2) Lus10017884 [exp] 174 / 4e-47 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10017885 [exp] 172 / 2e-46 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10033287 [exp] 171 / 2e-46 AT1G26110 222 / 3e-65 decapping 5 (.1.2) Lus10035052 [exp] 166 / 2e-44 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10035051 [exp] 157 / 4e-41 AT1G26110 297 / 1e-92 decapping 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [poplar] [flax] FDF FDF domain CL0527 [poplar] [flax] Sm-like PF14438 [poplar] [flax] SM-ATX Ataxin 2 SM domain
Representative CDS sequence Show only first row Show all	>Potri.004G235100.1 pacid=42795442 polypeptide=Potri.004G235100.1.p locus=Potri.004G235100 ID=Potri.004G235100.1.v4.1 annot-version=v4.1 ATGGCGTCGTCCTCTTCTTCGTCGTCTTCAAAAGCTGGAGAATCGTACATAGGAAGCCTAATTAGCATCACTTCTAAGTACGAGATTCGCTACGAAGGTG TTCTTTATCACATCAATCCACAAGACGCCACCATTGGCCTAAAAAACGTGAGGTCTTACGGAACAGAGGGTCGTAAGAAGGATGGACCACAAATTGCCCC TAGTGATAAGGTGTATGAATATATTCTATTTCGTGGAAGTGATATTAAGGATTTGCAAGTGCAGTCCCCACCTCCTGACCAAACAGAGGAACAGATTTAC AATGACCCTGCTATCATCCAGAACCATTCTGCTTTAAGTTCTTCAACTGCAGCTGGTGTTCAGGCACAACATACGCCTGCTTTGACGACCAGAGCCTATT CTGGTGCATTGCCTTTGTTTCAGCCTGTAAATCATGTTGGCTTAACAAATCTTTCCCAGGCTACTCAAAATGCTGGTCCATCTCTTTCCATTCCAAAGCA TTCACAAGGATACCATGGAATATCTTCCCAGCAGTCTATGGTTTCATCTCCCTTAATAGTTCAGAATCATATGCAGGCTCTTGGATTGCAGGAACCTCCA GTTATGGGATTGAAAAGTCCTTCAGAATGTATTACTCCTGAATCAACTGTTGCAACTAATCCATTTAATCCAATCTTTTCATCTTCCCTTTCACCGGTAC AGTATGCGACTTCTCCTGACACATCATCCTTCTTATCTCTGAAGACACCTGTTCCATCTCATGCTGCATCTCTTCCTGCTAATAGATTAACCATGTCTTC GATTCCCATGACTTCGATTCCCATGTCTAGTCAAGACATCAACACAACTGAAACTCTAGCTGTTGCGGACCCCATGGCTATGCGTCCTGCCCAATCTTTG CCTTACCTCATGCCATCCTATGTTGGTTCTACTTCTAGCTCTGTGTTAACACCACTTCCATCTCTTTTAAGTCCTCATCACTTCTTACAGTCTAGGCCAC CCGTGCTTTCTTCCCCACAGAAGCTGTACCCTGACCAGAAAGATGTAGCTGCTCTGACTCCTTTATCATCTACTTCTCCACCCTTGCTTTCTACTCCAGC ATCTCAACCACCATTATTACCTTTGCCAGGTTCTGTACAACAGCATAAATACTTGACCTCAAAATTTACAGAAGAATTCGATTTTGAAGCCATGAATGAG AAGTTTAAAAAAGATGAGGTTTGGGGTTATCTTGGAAAGGCAAAGCAAAGAGAGAAAACTGAAGGCATGGAGGATAACACAACTGATCAAAGCATGGTGG ACAAAGAGGCCCCTGTTGTGGTTCTTAATCTCGATCCTAAGCCTGCCTACAAGAAGGATGAATTCTTTGATACAATTTCTTGCAACATCCGCAATCAGCG GTGGAATGGGCAGAACTGTTTCTCTGAGCGAATGAAGCTGGATACTGAGACTTTTGGCAACTTGCATCTCAGACCTAATTTGGGTTATGGAGGCATCGGT TCTGGACGTGGTGATACCTATCACACCTCACGTGGTCGGGGAAGGGGATATGGTTATCGTGGGAGGGGGCGTGGGTACATTGGATTCTGA
AA sequence Show only first row Show all	>Potri.004G235100.1 pacid=42795442 polypeptide=Potri.004G235100.1.p locus=Potri.004G235100 ID=Potri.004G235100.1.v4.1 annot-version=v4.1 MASSSSSSSSKAGESYIGSLISITSKYEIRYEGVLYHINPQDATIGLKNVRSYGTEGRKKDGPQIAPSDKVYEYILFRGSDIKDLQVQSPPPDQTEEQIY NDPAIIQNHSALSSSTAAGVQAQHTPALTTRAYSGALPLFQPVNHVGLTNLSQATQNAGPSLSIPKHSQGYHGISSQQSMVSSPLIVQNHMQALGLQEPP VMGLKSPSECITPESTVATNPFNPIFSSSLSPVQYATSPDTSSFLSLKTPVPSHAASLPANRLTMSSIPMTSIPMSSQDINTTETLAVADPMAMRPAQSL PYLMPSYVGSTSSSVLTPLPSLLSPHHFLQSRPPVLSSPQKLYPDQKDVAALTPLSSTSPPLLSTPASQPPLLPLPGSVQQHKYLTSKFTEEFDFEAMNE KFKKDEVWGYLGKAKQREKTEGMEDNTTDQSMVDKEAPVVVLNLDPKPAYKKDEFFDTISCNIRNQRWNGQNCFSERMKLDTETFGNLHLRPNLGYGGIG SGRGDTYHTSRGRGRGYGYRGRGRGYIGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45330		DCP5-L	decapping 5-like (.1)		Potri.004G235100 [exp]	0	1
AT4G39300			unknown protein		Potri.004G154800 [exp]	5.19	0.7657
AT1G75330		OTC	ornithine carbamoyltransferase...		Potri.005G229400 [exp]	11.57	0.7422
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	13.49	0.7044
AT5G54810		ATTSB1, TRP2, T...	TRYPTOPHAN BIOSYNTHESIS B, TRY...		Potri.011G136000 [exp]	19.79	0.6808
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	19.89	0.7348
AT3G10950			Zinc-binding ribosomal protein...		Potri.002G140100 [exp]	22.18	0.7339
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	23.49	0.7174
AT4G39380			unknown protein		Potri.007G077700 [exp]	27.96	0.6845
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	30.41	0.6814	SR45.1
AT3G10950			Zinc-binding ribosomal protein...		Potri.003G085100 [exp]	30.59	0.7151

Compare expression of checked genes

Potri.004G235100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.