Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31730 1392 / 0 Adaptin family protein (.1) AT1G60070 243 / 1e-67 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 224 / 8e-61 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT5G22780 197 / 1e-51 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 197 / 1e-51 ALPHA-ADR alpha-adaptin (.1.2.3) AT1G48760 116 / 2e-26 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23940 74 / 2e-13 ARM repeat superfamily protein (.1) AT4G31490 57 / 5e-08 Coatomer, beta subunit (.1) AT4G31480 57 / 6e-08 Coatomer, beta subunit (.1.2) AT5G11490 51 / 4e-06 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G104700 [exp] 247 / 9e-69 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 242 / 4e-67 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 208 / 4e-55 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 200 / 1e-52 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.012G055000 [exp] 113 / 2e-25 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 111 / 1e-24 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.018G007400 [exp] 62 / 2e-09 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 54 / 4e-07 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G243100 [exp] 44 / 0.0006 AT5G11490 1355 / 0.0 adaptin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037272 [exp] 1506 / 0 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 1482 / 0 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 1447 / 0 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 1387 / 0 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10012988 [exp] 234 / 1e-64 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 226 / 1e-61 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10020522 [exp] 204 / 6e-54 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 202 / 3e-53 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 201 / 6e-53 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 196 / 4e-51 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01602 [poplar] [flax] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Potri.004G235200.3 pacid=42796165 polypeptide=Potri.004G235200.3.p locus=Potri.004G235200 ID=Potri.004G235200.3.v4.1 annot-version=v4.1 ATGGAGCAACTAAAAACAATAGGAAGGGAGCTGGCGATGGGGTCTCAGGGAGGATTCGGCCAATCCAAAGAATTCCTCGATCTCGTCAAATCAATCGGCG AGGCTCGATCTAAGGCCGAAGAAGATCGAATTGTCCTTCGGGAGATCGAATCCCTCAAACGACGCATCGTTGAACCCGGCATCCCTAAGCGCAAGATGAA GGAGTACATAATCCGTTTAGTCTACGTCGAGATGCTCGGCCACGACGCGTCGTTCGGATACATCCACGCCGTTAAAATGACTCATGACGACAATTTGGTC CTCAAACGGACTGGTTACTTGGCCGTCACTTTGTTCTTGAACGAAGATCATGATCTCATTATCTTGATTGTCAATACGATACAGAAGGACTTGAAATCGG ACAATTATTTGGTTGTTTGTGCGGCTTTGAATGCCGTTTGTAAGTTGATCAACGAGGAGACCATACCTGCTGTGTTGCCGCAAGTGGTTGAGTTGTTAGG GCATTCTAAGGAGGCTGTTAGGAAGAAGGCCATTATGGCTCTTCATCGCTTCTATCATAAGTCTCCGTCCTCTGTTTCACATCTCCTTTCCAATTTCCGC AAGAAGCTTTGCGATAGTGATCCTGGCGTAATGGGTGCAACACTCTGCCCACTTTTTGATCTTATAACAATAGATGCGAATTCTTATAAGGATTTAGTGG TCAGCTTCGTCAGCATTCTTAAACAAGTAGCTGAACGCAGATTGCCAAAGGTTTATGACTATCATCAGTTGCCAGCTCCGTTCATTCAGATCAGGTTGCT GAAAATTCTAGCCTTGCTAGGAAGTGGTGACAAGCAAGCAAGCGAGCACATGTATACTGTTGTGGGTGACATATTCGGGAAGTGTGACTCATCAAGTAAT ATAGGAAATGCTGTCCTTTATGAGTGTATATGTTGTGTTTCTTCAATACATCCCAATCCTAAGCTATTAGAAGCTGCTGCCGATGTAATAGCAAGATTTT TGAAGAGTGACAGTCACAATCTGAAATATATGGGCATTGATGCCCTTGGTCGATTGATAAAACTTAGTCCAGAGATTGCTGAACAACACCAATTGGCTGT GATAGATTGCTTAGAGGATCCAGATGATACTTTGAAGAGAAAAACATTTGAGCTCCTGTATAAAATGACTAAATCCTCTAATGTGGAAGTGATTGTTGAC CGCATGATTGATTACATGATTAGCATTAATGACAATCATTACAAGACTGAAATAGCATCTCGATGTGTTGAACTTGCTGAGCAATTTGCACCTAGCAACC ACTGGTTTATTCAGACCATGAATAAAGTCTTTGAGCATGCGGGAGATCTGGTGAATATTAAGGTGGCACATAACTTGATGCGCCTGATTGCTGAGGGATT TGGGGAGGATGATGATACTGCAGATAGCCAGCTGAGATCATCTGCTGTTGAGTCATATTTGCATATTATTGGGGAGCCGAAGCTTCCATCTGTGTTTCTT CATGTCATTTGTTGGGTCTTGGGGGAATATGGAACTGCTGATGGAAAGTTCTCTGCTTCATATGTCACTGGAAAGTTATGCGATGTGGCAGAGTCATATT CAAGTGATGAAACTGTCAAGGCATATGCGGTTACAGCGCTCATGAAAATATATGCATTTGAAATAGCTGCTGGGAGAAAATTGGATATACTACCTGAGTG TCAATCTCTGATTGAGGAATTATCAGCTTCCCACTCAACAGACTTGCAGCAGCGTGCGTATGAACTCCAAGCAGTCATTGGCTTAGATGTGAGAGCAATT GGATCTATTATGCCATCAGATGCAAGCTGCGAAGACATTGAGGTTGACAAGTGTCTTTCTTTTCTTGATGGTTATGTTCAGCAATCACTAGAGAAAGGGG CTCAGCCCTATATTCCGGAGAATGAACGTTCTGGAATGGTAAATATCAGCAACTTCAGAAACCAAGACCAACTTGAAGTTGCATCTCATGGTCTTAGGTT TGAGGCTTATGAACTTCCAAAGCCCTCAGTGCAGTCATGGACTCCACCTATGTCAGTGGCATCTTCAACCGAACTTGTCCCCGTTCCTGAGCCATCTTAT TATAGAGAGACCCCACAAACAGCATCAGTGCCATCTTCATCTGATACAGGGCCATCGGGACTCAAGCTGCGACTTGATGGGGTTCAAAAGAAGTGGGGCA GGCCAACTTATTCCTCTTCTTCAGCTTCTACTTCAAATTCTTCTTCACTGAAAGCGGTGAATGGGGTCACACAAGTAGATGGGGTGAGCACCGGAAATTC AAAAACACATGAAACTTCATACGATTCAAGGAGGCCACAAGTTGAAATCTCTGAAGAAAAACAGAAGCTTGCTGCATCATTATTTGGGGGTTCATCAAAA ACTGAGAGGAGATCGTCTACAGGCCATAAGGTTGCAAAGGCAAGCAGCCACGCTGCTGAAAAGCTCCACACTCCAAAGTCCACAGCTATCTCTAGCGCTG ACAATGCAGTGGAAAAACCAAATCTTGTTCAACCACCTCCAGATTTGCTTGACTTGGGCGAACCAATTGTTACAAGTAGTGCTCCATCAGTAGATCCATT CAGGCAACTGGAAGGGTTGCTGGACGCAACCCAAGTTCCTGGTACCTTGGGGGGTACCAAAGCACCTGATTTTATGGCATTATATGCAGAGACACCTGCA AGTGGGCAGAGTGCTGGTGTTTCTCATCCCTTGTCATTGATTAGGGATGAAATCAATTTAGTACCTGGGTTGTCAAATGCAAGTAGCAATACTGTTCATG GTGGAGCTACAGCGGCGAACCCCTCGCAAATTAGCAAAGGTCCAAATGTCAAGGATGCCTTAGAAAAGGATGCACTTGTAAGGCAGATGGGTGTGACGCC ATCAGGTCAAAATCCCAACTTATTCAAGGATTTGTTCGGCTAG
AA sequence Show only first row Show all	>Potri.004G235200.3 pacid=42796165 polypeptide=Potri.004G235200.3.p locus=Potri.004G235200 ID=Potri.004G235200.3.v4.1 annot-version=v4.1 MEQLKTIGRELAMGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLREIESLKRRIVEPGIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLV LKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFYHKSPSSVSHLLSNFR KKLCDSDPGVMGATLCPLFDLITIDANSYKDLVVSFVSILKQVAERRLPKVYDYHQLPAPFIQIRLLKILALLGSGDKQASEHMYTVVGDIFGKCDSSSN IGNAVLYECICCVSSIHPNPKLLEAAADVIARFLKSDSHNLKYMGIDALGRLIKLSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVD RMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDTADSQLRSSAVESYLHIIGEPKLPSVFL HVICWVLGEYGTADGKFSASYVTGKLCDVAESYSSDETVKAYAVTALMKIYAFEIAAGRKLDILPECQSLIEELSASHSTDLQQRAYELQAVIGLDVRAI GSIMPSDASCEDIEVDKCLSFLDGYVQQSLEKGAQPYIPENERSGMVNISNFRNQDQLEVASHGLRFEAYELPKPSVQSWTPPMSVASSTELVPVPEPSY YRETPQTASVPSSSDTGPSGLKLRLDGVQKKWGRPTYSSSSASTSNSSSLKAVNGVTQVDGVSTGNSKTHETSYDSRRPQVEISEEKQKLAASLFGGSSK TERRSSTGHKVAKASSHAAEKLHTPKSTAISSADNAVEKPNLVQPPPDLLDLGEPIVTSSAPSVDPFRQLEGLLDATQVPGTLGGTKAPDFMALYAETPA SGQSAGVSHPLSLIRDEINLVPGLSNASSNTVHGGATAANPSQISKGPNVKDALEKDALVRQMGVTPSGQNPNLFKDLFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31730			Adaptin family protein (.1)		Potri.004G235200 [exp]	0	1
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	7.74	0.8100
AT5G18230			transcription regulator NOT2/N...		Potri.013G059800 [exp]	8.12	0.8040
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.001G255000 [exp]	14.24	0.7753
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	14.96	0.7709
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.004G236900 [exp]	17.60	0.8048
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	19.97	0.7252
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	20.39	0.7675
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	35.46	0.7443
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	50.10	0.7516
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	56.78	0.7351

Compare expression of checked genes

Potri.004G235200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.