Plant FIBer expression Database

Potri.004G235300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19350 159 / 1e-49 EMB3006 embryo defective 3006 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033307
[exp]
77 / 1e-18 AT4G19350 44 / 2e-06 embryo defective 3006 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03980 Nnf1 Nnf1
Representative CDS sequence
>Potri.004G235300.5 pacid=42796145 polypeptide=Potri.004G235300.5.p locus=Potri.004G235300 ID=Potri.004G235300.5.v4.1 annot-version=v4.1
ATGGAGAAAGCAACTAGTAGTGCTGCTTCTGCTTCTGCTGCTGCTCCTGCTAAAATAGGAGGAGGAGGATCAAGGAGGCAATCCGATCTCAACAGATCCT
TCAAGCTCGCTATTCGCTCTCTCCTCACTTCCTGCTCCAAACAGGAGTTGGCAAAAGCATTTTCCAAGTTTAGTAATGCAGAGCAGGAAAGTCTTCACCG
TCTTTTCATTCAGGTTATTACTTCTTTGCATAAAATGGTAGAGGATGAGTTCGAGTCTCTATGCCTCGAAACACAGGTGGGAACTGCTCTTGAGACTGTG
GAGCAACTTGTAGAAGAGCAAAATCTGGACCCTTTGTTCTCAGAAAAGTCTAATATAATGGATGCTGCAAAGAGTCTATCAATGGAGAAGAAAAATGAGA
TCCACTATTTGATGGGCATGCTGGAAAAGGCTGAAGAGCAGAATCGCCGTATCCGAGATCGTGTTGAACTACTCAAGCAAAAAATGCCTGATGACTCGGG
CATCTCAGTTGTCATGGAGAAGTTCAAAAGTGGCAATTTAAGTTATGGAACATGCAGTAATGGGATTTAA
AA sequence
>Potri.004G235300.5 pacid=42796145 polypeptide=Potri.004G235300.5.p locus=Potri.004G235300 ID=Potri.004G235300.5.v4.1 annot-version=v4.1
MEKATSSAASASAAAPAKIGGGGSRRQSDLNRSFKLAIRSLLTSCSKQELAKAFSKFSNAEQESLHRLFIQVITSLHKMVEDEFESLCLETQVGTALETV
EQLVEEQNLDPLFSEKSNIMDAAKSLSMEKKNEIHYLMGMLEKAEEQNRRIRDRVELLKQKMPDDSGISVVMEKFKSGNLSYGTCSNGI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19350 EMB3006 embryo defective 3006 (.1) Potri.004G235300
[exp]
0 1
AT3G66658 ALDH22A1 aldehyde dehydrogenase 22A1 (.... Potri.008G106000
[exp]
2.23 0.9286 ALDH22.1
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.013G029600
[exp]
2.82 0.9086
AT1G53320 TUB AtTLP7 tubby like protein 7 (.1) Potri.011G109300
[exp]
5.65 0.8941
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.017G057500
[exp]
8.77 0.8927
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.008G075300
[exp]
9.94 0.8940
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.010G096500
[exp]
10.24 0.9008 Pt-THRRS.2
AT3G61130 GAUT1, LGT1 galacturonosyltransferase 1 (.... Potri.014G073800
[exp]
11.48 0.9046
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.001G398900
[exp]
13.49 0.8985
AT2G25220 Protein kinase superfamily pro... Potri.018G022300
[exp]
15.49 0.8788
AT2G36910 ATMDR1, ATPGP1,... P-GLYCOPROTEIN 1, ARABIDOPSIS ... Potri.016G093600
[exp]
16.52 0.8781 PGP1.2

Potri.004G235300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.