Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP707.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19230 779 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 748 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 560 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 558 / 0 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 268 / 9e-85 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G32440 265 / 2e-83 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G05160 261 / 2e-81 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT5G38970 249 / 3e-77 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G19630 247 / 1e-76 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G30180 236 / 3e-72 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029100 [exp] 585 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.001G242600 [exp] 580 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G140900 [exp] 576 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 572 / 0 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G126100 [exp] 571 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 565 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G069600 [exp] 281 / 1e-89 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.017G099000 [exp] 281 / 1e-89 AT3G30180 648 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.004G117700 [exp] 273 / 1e-86 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033308 [exp] 744 / 0 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 742 / 0 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 735 / 0 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10042652 [exp] 546 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 541 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 522 / 0 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 518 / 0 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10016515 [exp] 500 / 3e-175 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10037273 [exp] 472 / 9e-166 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10040785 [exp] 403 / 4e-129 AT1G07510 1078 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G235400.1 pacid=42796413 polypeptide=Potri.004G235400.1.p locus=Potri.004G235400 ID=Potri.004G235400.1.v4.1 annot-version=v4.1 ATGGAATTCTCCCCCTCTGTGTTTTTCCTATCATTTGCTTCCATTCTATTGCTTGTAGGAGGACTTCTCTTCAAGTCCCTCCTCAAATTCTTTGCTTCTG ATCGCCCCCAGAGTTTGCCACTCCCTCCCGGCACCATGGGATGGCCTTATATGGGTGAAACATTCCAACTCTACTCTCAAGACCCCAATGTCTTCTTTGC CTCTAAGAGAAAGAGGTATGGCTCTATCTTCAAGACCCACATCTTGGGCTGTCCCTGTGTCATGATATCCAGCCCTGAAGCTGCAAAATTTGTCCTTGTA ACCAAATCCCATCTCTTCAAGCCAACATTTCCGGCTAGTAAAGAAAGGATGTTAGGCAAAGAAGCCATATTCTTTCACCAGGGAGCCTACCACATGAAAT TGAGAAAGCTTGTTCTTCGTGCTTTCTTGCCTGAAGCAATAAAAAACATCGTCCCTGATATTCAAAACATTGCCAAGGACTCTCTTCAATATTGGGAAGG AAGATTAATTAACACTTTCCAAGAAATGAAATCATACACATTCAATGTTGCATTACTTTCAATATTTGGGAAGGATGAAGTTCTATATAGAGAAGATCTT AAGAGGTGCTACTACATTCTCGAGAAGGGATACAATTCAATGCCCATTAACCTCCCAGGAACACTCTTCAACAAATCAATGAAAGCAAGAAAAGAGCTGG CTAGGATCTTGGCTAAAATCTTGTCCACAAGGAGGCAAATGAAGCTTGATCACAATGACTTACTTGGATCTTTCATGGGTGACAAGGAAGGTCTCACTGA CGATCAAATTGCCGACAACATCATTGGAGTAATCTTTGCTGCTCGTGACACCACAGCTAGTGTTTTGACATGGATTCTTAAATACCTTGGAGAGAATCCA AGTGTTCTTCAAGCTGTCACTGAAGAGCAGGAGGCCATAATGAGGAGTGAAGAAAAGGGTGATGAGGAGAAGCTCCTTACATGGGCAGATACCAAGAAGA TGCCGATAACTTCAAGGGTCATTCAAGAAACTCTAAGAGTTGCCTCGATTTTATCTTTTACCTTCAGAGAGGCGGTGGAGGATGTTGAATATGAAGGATA TTTGATCCCTAAGGGTTGGAAAGTCTTGCCACTTTTCAGAAACATTCACCACAGCCCAGAACTGTTTCCAGATCCTGAGAAGTTCGATCCTTCAAGATTT GAGGTTGCACCGAAGCCCAATACATTTATGCCATTTGGGAATGGGACCCACTCATGTCCTGGGAACGAGCTAGCCAAGGTGGAGATTTTGGTGCTACTCC ATCACCTAACCACCAAGTACAGGTGGTCTATTGTGGGTGCAAATAATGGGATTCAGTACGGCCCTTTTGCCCTTCCCCAGAATGGTTTGCCCATCATTTT ATCCCACAAGTCATAG
AA sequence Show only first row Show all	>Potri.004G235400.1 pacid=42796413 polypeptide=Potri.004G235400.1.p locus=Potri.004G235400 ID=Potri.004G235400.1.v4.1 annot-version=v4.1 MEFSPSVFFLSFASILLLVGGLLFKSLLKFFASDRPQSLPLPPGTMGWPYMGETFQLYSQDPNVFFASKRKRYGSIFKTHILGCPCVMISSPEAAKFVLV TKSHLFKPTFPASKERMLGKEAIFFHQGAYHMKLRKLVLRAFLPEAIKNIVPDIQNIAKDSLQYWEGRLINTFQEMKSYTFNVALLSIFGKDEVLYREDL KRCYYILEKGYNSMPINLPGTLFNKSMKARKELARILAKILSTRRQMKLDHNDLLGSFMGDKEGLTDDQIADNIIGVIFAARDTTASVLTWILKYLGENP SVLQAVTEEQEAIMRSEEKGDEEKLLTWADTKKMPITSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSPELFPDPEKFDPSRF EVAPKPNTFMPFGNGTHSCPGNELAKVEILVLLHHLTTKYRWSIVGANNGIQYGPFALPQNGLPIILSHKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Potri.004G235400 [exp]	0	1	Pt-CYP707.6
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.005G201250 [exp]	1.41	0.9116
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.005G201200 [exp]	2.00	0.9000	EXT.13
					Potri.009G076050 [exp]	8.48	0.8389
AT3G14470			NB-ARC domain-containing disea...		Potri.017G133600 [exp]	10.95	0.8607
					Potri.007G026000 [exp]	11.83	0.8540
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G122600 [exp]	15.81	0.8404
AT3G54000			unknown protein		Potri.016G105000 [exp]	19.67	0.7295
					Potri.001G308800 [exp]	20.44	0.7879
AT4G00231		MEE50	maternal effect embryo arrest ...		Potri.008G158901 [exp]	23.15	0.8419
AT1G77640	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G085600 [exp]	25.65	0.8295	DREB41

Compare expression of checked genes

Potri.004G235400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.