Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54590 162 / 1e-45 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT4G00330 159 / 9e-45 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT3G19300 163 / 1e-44 Protein kinase superfamily protein (.1) AT1G49730 163 / 2e-44 Protein kinase superfamily protein (.1.2.3.4) AT2G28250 160 / 4e-44 NCRK Protein kinase superfamily protein (.1.2) AT2G18470 160 / 1e-43 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G61860 155 / 2e-43 Protein kinase superfamily protein (.1) AT1G79620 161 / 3e-43 Leucine-rich repeat protein kinase family protein (.1) AT4G02630 157 / 3e-43 Protein kinase superfamily protein (.1) AT5G15730 155 / 3e-43 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100400 [exp] 174 / 1e-48 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 169 / 1e-46 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.004G231600 [exp] 166 / 6e-45 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G032100 [exp] 159 / 6e-45 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.011G164700 [exp] 165 / 7e-45 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.001G415300 [exp] 160 / 8e-45 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.001G217700 [exp] 165 / 1e-44 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.005G124400 [exp] 162 / 2e-44 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.002G242700 [exp] 164 / 3e-44 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034770 [exp] 345 / 3e-117 AT3G19300 170 / 2e-47 Protein kinase superfamily protein (.1) Lus10030741 [exp] 170 / 7e-49 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10014071 [exp] 174 / 2e-48 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 172 / 1e-47 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10012159 [exp] 172 / 4e-47 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016021 [exp] 163 / 2e-46 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10021460 [exp] 160 / 1e-43 AT2G28250 590 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003807 [exp] 161 / 3e-43 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10036376 [exp] 155 / 3e-43 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10015756 [exp] 155 / 6e-43 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G235700.1 pacid=42794555 polypeptide=Potri.004G235700.1.p locus=Potri.004G235700 ID=Potri.004G235700.1.v4.1 annot-version=v4.1 ATGTGGCTCTTTGGATTCTCCACCAAACATCCAAGAAATATGTGGATAATTGGAGCCATATCCCTAGTAATCCTTGTAATCACAGCCTTGAGGAGATATT TCATGCACCTTGATCATAAGAAAACAAGTGATGATGGTGATCATCGCTGCAGCACTGCTGTCCAAGTTACAGGAAGAGTAGTAGAGCAAGAAGCAGTGGT TACCAAGTGGTGCCCTGGTGTCATACGGACTTACGCACTCGAGGAGTTGAAGATGGCAACAAGGGATTTTCGAATTCGGATAGGGGTTGGAGCTACTTCT TTTGTTTATCTTGCAGATCTTGGGGATGGACGATTCGGGGCGGTGAAGAGAGTGATGGAGGATAGAGGTGGGAGCAAGAAGATATTCTTGGATGAAGTCT CAGTCTTGTTACGGATTTCTCATCCAAATTTAGCCAGGTTGATGGGTTTCTGCTTGGAAAAAGGAGAACAACTTCTTCTACTAGAGTATGTCCCAAACAA GACTCTCTTTGACAGGATCCATACTTACCATGGCCAATCCTCGGGTATTCTTTCATGGTCCAGCCGCTTAAGCATTGCACTTGACATTGCTCGAGCGCTC GATTACCTCCACTCGCGAGCTGATCCAACCATCATTCACAGGGATGTCAAGTCCTCTAACATCCTCTTAGTTGACGATGATCACGCCAAGTTAGCCGACT TTGGGCTATGCAAGTTAGGCTATGACAGACCAGACTCAGAAACTAGCACCACTCCTAGTACTTCTCCAACTAGCATCAAGGGCTCTTTTGGTTACATTGA CATCAACTACCTCAATACAGGCCTTGCAACACCCAAGATTGATGTTTATAGCTACGGGGTGCTACTACTTGAGCTCATCACAGGCCTCAAATCAATACAA GGTTCTGTGACGCTTGCTGAATGGACCGAGGAGTGGAGGAAGAGTGATGATGTAGAAGTTTGGGCTAATCTACTGGATCCAAAACTTAACGGGAATGCGA ATTTGGAGCAGTTAAGTGTATTGATCCATGTAGCCAATTTTTCTCTACTAGAGAATTCCGAAGGGAGACCAGAAATGGGGGAGATTGTCGATAGAATTCG AAGTTGTATGGAACCTCAACCCAATCCCCACTTGTTGTCAGTATAA
AA sequence Show only first row Show all	>Potri.004G235700.1 pacid=42794555 polypeptide=Potri.004G235700.1.p locus=Potri.004G235700 ID=Potri.004G235700.1.v4.1 annot-version=v4.1 MWLFGFSTKHPRNMWIIGAISLVILVITALRRYFMHLDHKKTSDDGDHRCSTAVQVTGRVVEQEAVVTKWCPGVIRTYALEELKMATRDFRIRIGVGATS FVYLADLGDGRFGAVKRVMEDRGGSKKIFLDEVSVLLRISHPNLARLMGFCLEKGEQLLLLEYVPNKTLFDRIHTYHGQSSGILSWSSRLSIALDIARAL DYLHSRADPTIIHRDVKSSNILLVDDDHAKLADFGLCKLGYDRPDSETSTTPSTSPTSIKGSFGYIDINYLNTGLATPKIDVYSYGVLLLELITGLKSIQ GSVTLAEWTEEWRKSDDVEVWANLLDPKLNGNANLEQLSVLIHVANFSLLENSEGRPEMGEIVDRIRSCMEPQPNPHLLSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.004G235700 [exp]	0	1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	1.41	0.9061
AT2G29040			Exostosin family protein (.1)		Potri.009G032500 [exp]	2.64	0.8866
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	4.69	0.9067
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.005G027400 [exp]	7.74	0.8929
					Potri.006G088500 [exp]	13.49	0.8363
AT5G06750			Protein phosphatase 2C family ...		Potri.006G192600 [exp]	17.26	0.7657
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035400 [exp]	17.74	0.8981
AT4G32340			Tetratricopeptide repeat (TPR)...		Potri.006G254300 [exp]	19.07	0.8338
					Potri.010G186750 [exp]	19.13	0.8122
					Potri.008G042900 [exp]	19.59	0.8320

Compare expression of checked genes

Potri.004G235700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.