Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35610 975 / 0 XEG113 xyloglucanase 113 (.1) AT1G70630 74 / 2e-13 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 58 / 9e-09 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01220 53 / 3e-07 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT1G19360 53 / 4e-07 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G56550 51 / 1e-06 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT4G01750 49 / 6e-06 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT4G01770 48 / 1e-05 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT4G19970 47 / 4e-05 unknown protein AT1G28710 45 / 8e-05 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186800 [exp] 68 / 1e-11 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.009G113300 [exp] 60 / 3e-09 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 57 / 3e-08 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G092400 [exp] 56 / 3e-08 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.002G134400 [exp] 56 / 6e-08 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G166000 [exp] 54 / 2e-07 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G051600 [exp] 50 / 3e-06 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.010G046100 [exp] 47 / 3e-05 AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027804 [exp] 934 / 0 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10005034 [exp] 917 / 0 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10036860 [exp] 71 / 6e-13 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 69 / 1e-11 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 58 / 1e-08 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10002153 [exp] 57 / 2e-08 AT4G01220 541 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10026327 [exp] 57 / 4e-08 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 55 / 1e-07 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10012650 [exp] 54 / 1e-07 AT4G01220 522 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10041976 [exp] 54 / 3e-07 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.004G235800.1 pacid=42795136 polypeptide=Potri.004G235800.1.p locus=Potri.004G235800 ID=Potri.004G235800.1.v4.1 annot-version=v4.1 ATGGTGGGAGGTGGGGGCGGGGGCGGAGGAGCATCTTCCACATGGAGGAATGCGTACCAGGAAATCGCCAACTCCAAGCCTCTCTTCGTCGCGATCTACG CCACTGTCTTCCTCGGAATCGTCTTCTCTTCCTTGTATGTTTTATCCGCCGTCTACTCCGCCAATTCATCCTCCTCCTCCACTTCCTGGCTCTCCTCTCC TCCCATTCCTACAAGTATTGATAATACTCGTCATGTGGATCAATCTTCCAATTTTTCCAAACCAACAACATTAGCTGCGGGTTCATCGCCACCGACATCC AACCCTCAAACCATGCAGATAAAACCAATTTGGGAACCTCCCCCACACGGTACCAAATTCCCGCCCTTAAAGACCTTTAGACTCACAAAACAACTGGTTC AGCAAAGGGTGAAAGATAATGTTATTATAGTCACCTTTGGTAACTATGCTTTCATGGATTTTATCCTTTCCTGGGTTAAACACTTGACTGATTTGGGCCT TTCCAATCTTCTTGTTGGTGCTATGGACACCAAGCTGTTGGAGGCTTTGTACTGGAAAGGTATTCCAGTTTTTGACATGGGAAGCCACATGAGCACCGCA GATGTTGGGTGGGGCTCGCCAACCTTTCATAAGATGGGAAGAGAAAAGGTTATTTTGATAGATGCAATCCTCCCTTATGGTGTTGAGCTATTGATGTGTG ACACAGACATGGTCTGGTTGAAGGACCCGCTTCCATATCTTGCACGTTATCCTGAAGCAGATGTTTTGACTTCAAGTGATCAAGTTGTACCCACAGTCGT TGATGACAGCTTGGACCTATGGCAACAAGTTGGTGCTGCCTATAATATAGGAATTTTCCACTGGCGACCAACAGAGTCTGCAAAAAAATTGGCGAGAGAA TGGAAAGATATGCTTCTAGCTGACGATAAGATATGGGATCAGAATGGATTCAATGATATTGTACGCAAGCAGTTGGGGCCGTCTGTTGATGGAGACAGTG GACTTGCATATGCTTTTGATGGAAATCTCAAACTTGGAGTTTTACCAGCAAGTATATTTTGCAGTGGACATACTTATTTTGTCCAGGCCATGTATCAACA ACTTAGACTGGAACCTTATGCAGTGCATACCACATTCCAGTATGCCGGTACTGAAGGGAAGAGGCATCGATTGCGGGAAGCCATGGTTTTTTATGATCCA CCGGAATACTATGATGCACCAGGAGGTTTCGTTTCATTCAAGCCGTCTATTCCAAAGAGTATGTTGCTGGATGGGGACCATAACCTTGAAACACACTTTT CTCTGATTAATTACCAAATAAAACAAATAAGGACAGCACTGGCAATTGCTTCGTTGTTAAAACGTGCGCTGGTCATGCCTCCACTTTGGTGCAGGCTGGA TAGACTATGGTTTGCCCATCCTGGAGTTCTGATTGGATCTATGACCAGGCAACCTTTTCTATGCCCTTTGGATCACGTATTTGAGGTGAATAACATGTTG AAAGAGCAGCCAGAGGAGGAGTTTGGCCCTGCAATCAATTTCAGAGAGTACTCTTTTTTGGATAATCCATTATTGCCTAGACATGTGAAAGAGTCGTGGC TTGATGTTCAGCTTTGTCAAGAAGGAGCTGAAGATTGTGGTGCGTCAAACAAGACAAGTCGGCCAGGAATACTCAGATTTCCAAAACGCAGCAATGAAGA CATGTTCAAGACCACATTCTCATCATTCAAGGATGTCAAAGTCATTCAATTCTCTTCAATGCAAGATGCTTTTGTTGGCTTCACTGACAAGAGAAGAGAG GAGAAATTTAGGAATCGCATGAAACGTTATGTTGGTATATGGTGCTGTGTTGAAAATCACGATCCTGGACATATATACTATGACATGTACTGGGACGAGA AATCCAATTGGAAACCGATGCCACCACAATCCGCAGAGGATGACCACCCACCTTGGTAA
AA sequence Show only first row Show all	>Potri.004G235800.1 pacid=42795136 polypeptide=Potri.004G235800.1.p locus=Potri.004G235800 ID=Potri.004G235800.1.v4.1 annot-version=v4.1 MVGGGGGGGGASSTWRNAYQEIANSKPLFVAIYATVFLGIVFSSLYVLSAVYSANSSSSSTSWLSSPPIPTSIDNTRHVDQSSNFSKPTTLAAGSSPPTS NPQTMQIKPIWEPPPHGTKFPPLKTFRLTKQLVQQRVKDNVIIVTFGNYAFMDFILSWVKHLTDLGLSNLLVGAMDTKLLEALYWKGIPVFDMGSHMSTA DVGWGSPTFHKMGREKVILIDAILPYGVELLMCDTDMVWLKDPLPYLARYPEADVLTSSDQVVPTVVDDSLDLWQQVGAAYNIGIFHWRPTESAKKLARE WKDMLLADDKIWDQNGFNDIVRKQLGPSVDGDSGLAYAFDGNLKLGVLPASIFCSGHTYFVQAMYQQLRLEPYAVHTTFQYAGTEGKRHRLREAMVFYDP PEYYDAPGGFVSFKPSIPKSMLLDGDHNLETHFSLINYQIKQIRTALAIASLLKRALVMPPLWCRLDRLWFAHPGVLIGSMTRQPFLCPLDHVFEVNNML KEQPEEEFGPAINFREYSFLDNPLLPRHVKESWLDVQLCQEGAEDCGASNKTSRPGILRFPKRSNEDMFKTTFSSFKDVKVIQFSSMQDAFVGFTDKRRE EKFRNRMKRYVGIWCCVENHDPGHIYYDMYWDEKSNWKPMPPQSAEDDHPPW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	2.82	0.8981
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	3.87	0.8883
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	4.00	0.8874	Ptr4CL14
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	4.24	0.8887
AT4G08310			unknown protein		Potri.005G176400 [exp]	5.19	0.8410
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145540 [exp]	5.47	0.8591
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	6.16	0.8493
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	7.07	0.8828
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	8.66	0.8525
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003200 [exp]	9.16	0.8545

Compare expression of checked genes

Potri.004G235800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.