Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATRLI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19210 1171 / 0 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) AT3G13640 1013 / 0 ABCE1, ATRLI1 ATP-binding cassette E1, RNAse l inhibitor protein 1 (.1) AT4G30300 228 / 1e-71 ABCE3, ATNAP15 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 15, ATP-binding cassette E3, non-intrinsic ABC protein 15 (.1) AT4G25750 62 / 6e-10 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT3G55100 61 / 2e-09 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G61700 61 / 2e-09 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT5G64840 60 / 3e-09 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 59 / 6e-09 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT3G47770 59 / 6e-09 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT5G19410 59 / 7e-09 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045700 [exp] 1217 / 0 AT4G19210 1157 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Potri.005G064300 [exp] 64 / 1e-10 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G084800 [exp] 62 / 6e-10 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.017G067804 [exp] 61 / 8e-10 AT5G14100 346 / 1e-120 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Potri.007G080600 [exp] 61 / 2e-09 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.009G070100 [exp] 61 / 3e-09 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 59 / 1e-08 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G062800 [exp] 57 / 1e-08 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.012G069700 [exp] 58 / 2e-08 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034771 [exp] 1191 / 0 AT4G19210 1167 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Lus10033309 [exp] 1191 / 0 AT4G19210 1166 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Lus10035195 [exp] 68 / 4e-12 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10004496 [exp] 65 / 1e-10 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 63 / 4e-10 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10005798 [exp] 63 / 6e-10 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000827 [exp] 61 / 6e-10 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10006804 [exp] 61 / 2e-09 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10027545 [exp] 61 / 2e-09 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10032025 [exp] 59 / 4e-09 AT5G14100 303 / 1e-103 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0344 [poplar] [flax] 4Fe-4S PF00037 [poplar] [flax] Fer4 4Fe-4S binding domain CL0344 [poplar] [flax] 4Fe-4S PF04068 [poplar] [flax] RLI Possible Fer4-like domain in RNase L inhibitor, RLI
Representative CDS sequence Show only first row Show all	>Potri.004G235900.1 pacid=42795789 polypeptide=Potri.004G235900.1.p locus=Potri.004G235900 ID=Potri.004G235900.1.v4.1 annot-version=v4.1 ATGTCAGATCGATTGACGCGTATAGCTATAGTAACCTCCGACAGATGCAAACCTAAGAAGTGCCGTCAAGAATGCAAGAAAAGTTGCCCTGTCGTCAAAA CTGGGAAGCTGTGTATCGAGGTAACTCCAGCTTCGAAGATAGCTTTTATCTCGGAGGAGCTGTGCATTGGATGTGGTATCTGTGTTAAGAAATGCCCGTT TGAAGCAATTCAGATCATTAACTTGCCCAAGGATTTGGATAAAGACACGACCCATCGTTATGGTCCCAATACCTTTAAATTGCACAGGTTACCAGTCCCG AGGCCTGGGCAAGTTCTTGGCTTGGTTGGAACAAATGGTATTGGCAAGTCCACTGCTCTCAAAGTTCTGGCTGGAAAACTCAAACCTAATTTGGGTCGAT TCAATAACCCTCCTGATTGGCAGGAAATCTTGACTTACTTTCGAGGATCTGAGCTTCAGAATTACTTTACCCGTATCCTAGAGGATAATTTGAAGGCCAT CATAAAGCCTCAGTATGTTGACCATATTCCAAGAGCAGTTCAAGGCAATGTTGGACAGGTGCTTGACCAAAAAGATGAGAGGGACAAGAAGGCGGAACTT TGTCGTGATCTTGAACTGAACCAGGTTATAGATCGTAATGTTGGGGATTTATCTGGTGGAGAGCTCCAAAGATTTGCCATTGCTGTTGTTGCAATACAGA ATGCAGAGATATATATGTTTGATGAACCTTCAAGTTATCTTGATGTCAAACAGAGGCTCAAAGCTGCCCAAGTTATCAGATCTTTGCTCAGGCCCAACAG CTATGTAATTGTGGTGGAGCATGATCTCAGTGTCCTGGATTATTTATCTGACTTCATTTGCTGCTTGTACGGGAAACCGGGTGCATATGGAGTGGTAACT CTTCCCTTCTCTGTGAGAGAAGGTATCAATATATTCTTGTCTGGGTTTGTTCCTACAGAAAATCTACGATTCCGGGATGAATCTTTAACCTTCAAGGTTG CTGAGACTCCACAGGAGAATGCTGAGGAGATTCAAACATATGCACGATACAAATACCCAACCATGAGTAAAACTCAGGGAAATTTTAAACTTCGTGTCGT TGAGGGTGAATTTACTGACTCTCAGATTGTTGTAATGCTAGGTGAGAATGGGACAGGGAAGACAACATTTATCCGTATGCTGGCTGGTTTATTGAAACCT GATACTGTAGAGGGTTCCGAAGCTGAGATACCTGAGTTCAATGTTTCTTACAAGCCTCAGAAGATCAGTCCCAAATTTCAATTCAGTGTCAGGCAGTTAC TGCATTCTAAAATACGTGATTCGTATATGCATCCTCAGTTTGTTTCAGATGTCATGAAACCACTTCTTATTGAGCAACTGATGGATCAAGAAGTAGTAAA TCTGTCTGGTGGAGAGTTGCAAAGAGTTGCTTTATGTCTATGCCTTGGAAAGCCAGCTGACATTTATCTGATAGATGAACCGAGTGCATATCTTGATTCT GAGCAGCGTATCGTTGCTTCGAAAGTCATCAAGAGGTTTATCCTACATGCAAAGAAGACTGCATTTGTGGTCGAGCATGATTTTATAATGGCATCATACC TGGCTGATAGAGTTATTGTGTATGAGGGACAGCCTTCTGTGGATTGCACAGCAAATTCTCCCCAGTCATTGTTGACTGGGATGAATCTCTTCTTATCTCA CCTGGATATCACATTTAGGCGAGACCCCAGTAATTACCGGCCAAGAATCAACAAATTGGAGTCCACCAAGGATAGGGAGCAGAAGGCTGCTGGGTCATAT TATTACCTGGACGATTGA
AA sequence Show only first row Show all	>Potri.004G235900.1 pacid=42795789 polypeptide=Potri.004G235900.1.p locus=Potri.004G235900 ID=Potri.004G235900.1.v4.1 annot-version=v4.1 MSDRLTRIAIVTSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVP RPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAVQGNVGQVLDQKDERDKKAEL CRDLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT LPFSVREGINIFLSGFVPTENLRFRDESLTFKVAETPQENAEEIQTYARYKYPTMSKTQGNFKLRVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKP DTVEGSEAEIPEFNVSYKPQKISPKFQFSVRQLLHSKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS EQRIVASKVIKRFILHAKKTAFVVEHDFIMASYLADRVIVYEGQPSVDCTANSPQSLLTGMNLFLSHLDITFRRDPSNYRPRINKLESTKDREQKAAGSY YYLDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	0	1	Pt-ATRLI1.1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	3.74	0.8084	Pt-LON_ARA_ARA.1
AT1G32260			unknown protein		Potri.001G138200 [exp]	4.24	0.7989
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	4.89	0.7453
					Potri.016G052901 [exp]	5.47	0.7860
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195300 [exp]	5.65	0.7871
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	9.16	0.7716	TIM50.1
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.011G105500 [exp]	9.94	0.7373
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	10.90	0.7830
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	11.40	0.7448
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.011G102100 [exp]	12.40	0.7703

Compare expression of checked genes

Potri.004G235900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.