Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07530 674 / 0 unknown protein AT5G23880 56 / 6e-08 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT2G01730 53 / 5e-07 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106200 [exp] 54 / 3e-07 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040483 [exp] 654 / 0 AT3G07530 548 / 0.0 unknown protein Lus10011289 [exp] 651 / 0 AT3G07530 557 / 0.0 unknown protein Lus10035763 [exp] 63 / 5e-10 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 62 / 1e-09 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF16661 [poplar] [flax] Lactamase_B_6 Metallo-beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.004G236000.3 pacid=42794914 polypeptide=Potri.004G236000.3.p locus=Potri.004G236000 ID=Potri.004G236000.3.v4.1 annot-version=v4.1 ATGCAAGAGAAGTTGCCCCGTCGTCAAAACTGGGTGAGGCTGGGGGTGAACTCAAAACCCCAATTGTATTTTCTCTTAATCATGAAATTTACTTGCTTGA GCAAAGGAAGTGGTTTCCATTTCCCACCATGTCACATTCTTGATGTGAGTGGATTCAGGATATTACTTGATTGCCCTTTGGACCTTTCTGCTCTCACAAT CTTTTATCCTGTTTCTCCATCATCCAAAATGGAGGAGGGGGAGCAAACTTATGATTTTGCTGTCAACAATTGTTTGGATATGAGGAAGAGGCAGAAAATT CTTAAGTCTTTGATCTGTGCTCAGCCTTGGTATAAAACTCCCAATAATTTGCACCTTTGGGATCCTTCTTCCATTGATCTTGTACTGATTTCAAGCACAA TGGGGATGCTTGCCCTCCCTTTTCTTACTCAAACCAAGGGCTTTTCTGCTAAGATATATGCAACTGAAGCAACAACAAGGCTTGGACAGCTTATGATGGA GGATCTTGTTTTAATGCATAACGAATTCCATCATTTTTTTGGATCTGACTCTGGTTCTCCTCAATGGATGAGCTGGGAGGAGCTTGAACTGCTTTCACCT GCCTTGAGACAAGTAGCTCTAGGCAAAGATGGAACAGAGTTGGGTGGATGGATGCCCCTGTACAGGTCTGCGGATGTGGAGGACTGCGTGAAGAAGGTTC AAACACTTAAATATGCAGAGGAAGCCTGGTACAATGGGACATTGTTGATTAAAGCATTCAGCTCGGGCTTAGAAATAGGCTCCTGTAATTGGACTATAAA TAGTCCAAAAAGAAATATTGCATGTATTTCAAGCTCTAAATTTTACTCTGTTAATGCAATGGAGTTTGATTATCATGCTCTGCGAGGTAATGATCTGATA TTATATTCAGACTTCTCATCTGAGGGTGTCTTGACAAATGATGAACATGATAATAACTTCTCTGCTTCAACTACCTACAATTCATCAACTCCCAGTGCTG ATAACGACGATCGGATACTGAAAGAATGCTTATTGCGTAATGATGAGAGTTTAGAGGAAAGGGAGAAACTGGCATTTATCTGTTCATGTGTTGTAGATTC TGTTAAAGCTGGTGGCTCTGTCATTATTCCTTTAAATCAACTTGGAATTGTTCTGCAGCTGTTGGAACAGATACCAGTGTACCTTGAATCTTCAGCTATG AAGGTTCCAATATATGTCATCTCTTCTGTAGCAGCAGAACTTCTGGCATTCACCAATATCATACCAGAATGGTTATGCAAGGAGCGACAAGAGAAGCTAT TTTCTGGTGAGCCACTGTTTTCACACTCGGAGCTCATGAAAGGAGAGAAACTTTATGTCTTTCCTGATGTTCACTCACCCGAACTATTTATTTTCAATCT TCACTTCAGTGAACCATGTATTGTATTTTCTCCTCACTGGAGTCTGCGGCTTGGTCCAGTTGTTCATTTGCTTCGACGTTGGCGTGAGGATGAAAACTCC TTGCTTGTTTTGGAGGATGGACTGGATACTGATATGGCTCTCTTGCCTTTCAAGCCAATGGCAATGAAAGTTCTCCAGTGCTCATTCCTTTCCGGAATAA GGTTGCAAAAAACTCAACCTTTGTTAGAGATGTTGCGGCCAAAAGAAGTTCTGTTCCCAGAGGATTTGAGGGAACAAATCAAGTTTTCAGGCTCACATTC ATTCTCAGTATTCTACTATGCTGAAAATGAAACATTAGGTGTACCAAGATCGAAAGGCAGCGTGGATCTAGAGATTGCGTCAAACTTGGCTACACAGTTC AGTTGGAGAAAGTTGGATCATGATGACGTGGATATAACAAGACTGGAAGGACAGCTATTCATAGATCATGGCAAACATCAGGTACTATCAGGCAACAAGG TATCAGAGATGGCCTCAAGAAAGAAGCCATTACTGCATTGGGGTGTTCCAGATGTGGAGAAGCTGCTTACTGTGTTATCAAAGATGGGTGTAAAAGGATC TGTAGAACGATGCATGAGTGATGCTGAATCTGGAAGCGATGAGATCGTACACATCCATGAACCAAGCAAAGCCTTGATTGAGGTTAGGGCAACGAGGACT GTTATTAGTGCCCGGGATGAGCAATTAGCCTCCCTTATTTTCGAGGCAATTGGTACTCTTACGGGTGGCATTTAG
AA sequence Show only first row Show all	>Potri.004G236000.3 pacid=42794914 polypeptide=Potri.004G236000.3.p locus=Potri.004G236000 ID=Potri.004G236000.3.v4.1 annot-version=v4.1 MQEKLPRRQNWVRLGVNSKPQLYFLLIMKFTCLSKGSGFHFPPCHILDVSGFRILLDCPLDLSALTIFYPVSPSSKMEEGEQTYDFAVNNCLDMRKRQKI LKSLICAQPWYKTPNNLHLWDPSSIDLVLISSTMGMLALPFLTQTKGFSAKIYATEATTRLGQLMMEDLVLMHNEFHHFFGSDSGSPQWMSWEELELLSP ALRQVALGKDGTELGGWMPLYRSADVEDCVKKVQTLKYAEEAWYNGTLLIKAFSSGLEIGSCNWTINSPKRNIACISSSKFYSVNAMEFDYHALRGNDLI LYSDFSSEGVLTNDEHDNNFSASTTYNSSTPSADNDDRILKECLLRNDESLEEREKLAFICSCVVDSVKAGGSVIIPLNQLGIVLQLLEQIPVYLESSAM KVPIYVISSVAAELLAFTNIIPEWLCKERQEKLFSGEPLFSHSELMKGEKLYVFPDVHSPELFIFNLHFSEPCIVFSPHWSLRLGPVVHLLRRWREDENS LLVLEDGLDTDMALLPFKPMAMKVLQCSFLSGIRLQKTQPLLEMLRPKEVLFPEDLREQIKFSGSHSFSVFYYAENETLGVPRSKGSVDLEIASNLATQF SWRKLDHDDVDITRLEGQLFIDHGKHQVLSGNKVSEMASRKKPLLHWGVPDVEKLLTVLSKMGVKGSVERCMSDAESGSDEIVHIHEPSKALIEVRATRT VISARDEQLASLIFEAIGTLTGGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07530			unknown protein		Potri.004G236000 [exp]	0	1
AT3G59090			unknown protein		Potri.002G058500 [exp]	2.44	0.7297
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.014G077200 [exp]	4.69	0.7549
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	6.70	0.7547
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	8.48	0.7627
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	8.71	0.7337
AT2G27900			unknown protein		Potri.009G002900 [exp]	9.21	0.7313
AT3G53390			Transducin/WD40 repeat-like su...		Potri.016G088800 [exp]	14.96	0.7078
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	16.24	0.7040	ARL1.3
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	18.70	0.7045
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	20.49	0.6784

Compare expression of checked genes

Potri.004G236000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.