Plant FIBer expression Database

Potri.004G236100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02162 XYPPX XYPPX repeat (two copies)
Representative CDS sequence
>Potri.004G236100.2 pacid=42795046 polypeptide=Potri.004G236100.2.p locus=Potri.004G236100 ID=Potri.004G236100.2.v4.1 annot-version=v4.1
ATGGGAGGTGGAAAAGATAAGGACAAGAATGGTGACGAGCAGGAAAAAGGTCTCTTTGGTCATGGTTTTGGTCATGGTGCTCCTGGATATCCTCCACAGC
CTGGAGCATATCCCCCTCAAGGCTATCCTCCTCAAGGTTATCCACCCCAAGGGTATCCCCCACAGGGCTACCCTCCCGCTGGGTACCCTCCCGGTGCATA
CCCACCATCTGGTTATCCTCCTGGCCCATCTGCTCCCCACCAACCAGGACATAGTGGTGGGGGCCTTGGGGGCCTGCTTGCTGGGGGGGCTGCTGCTGCT
GCAGCCGCTTATGGTGCCCATGCGCTTCAAGGTGTAGGCCGTGGTGGTTACGGCGGAGGCCATGGTGGTTACGGCGGAGGCGGTTACGGAGGGGGCCATG
GTGGTTACGGAGGGGGCCATGGTGGTTACGGCGGGGGCTATGGTGGTGGTTATGGTGGTGGTCATGGAAAATTCAAGCACGGCGGCAAGCACGGCGGTGG
AAAATTCAAGCGTGGGAAGTTTGGGAAGAAGCACGGAGGAGGGAAATTTAAGAAGTGGAAGTGA
AA sequence
>Potri.004G236100.2 pacid=42795046 polypeptide=Potri.004G236100.2.p locus=Potri.004G236100 ID=Potri.004G236100.2.v4.1 annot-version=v4.1
MGGGKDKDKNGDEQEKGLFGHGFGHGAPGYPPQPGAYPPQGYPPQGYPPQGYPPQGYPPAGYPPGAYPPSGYPPGPSAPHQPGHSGGGLGGLLAGGAAAA
AAAYGAHALQGVGRGGYGGGHGGYGGGGYGGGHGGYGGGHGGYGGGYGGGYGGGHGKFKHGGKHGGGKFKRGKFGKKHGGGKFKKWK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G236100
[exp]
0 1
AT2G38640 Protein of unknown function (D... Potri.006G113400
[exp]
1.41 0.7954
AT3G62140 unknown protein Potri.014G112900
[exp]
2.44 0.7894
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Potri.006G200200
[exp]
4.47 0.7580
AT2G46140 Late embryogenesis abundant pr... Potri.002G165000
[exp]
9.21 0.8035 PM22.2
AT1G66260 RNA-binding (RRM/RBD/RNP motif... Potri.017G129900
[exp]
9.79 0.6853
Potri.001G142300
[exp]
11.31 0.7462
AT5G22360 ATVAMP714 vesicle-associated membrane pr... Potri.009G018900
[exp]
11.40 0.7313
AT1G53910 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) Potri.003G071700
[exp]
12.04 0.6792 ERF39,ERF1.4
AT2G01710 Chaperone DnaJ-domain superfam... Potri.002G105500
[exp]
14.49 0.6786
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Potri.006G086000
[exp]
16.73 0.7190

Potri.004G236100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.