Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45360 349 / 2e-120 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157900 [exp] 51 / 6e-07 AT5G21040 670 / 0.0 F-box protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035689 [exp] 433 / 4e-153 AT5G45360 351 / 6e-121 F-box family protein (.1) Lus10037278 [exp] 425 / 5e-150 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10026770 [exp] 47 / 1e-05 AT5G21040 647 / 0.0 F-box protein 2 (.1.2) Lus10008402 [exp] 47 / 1e-05 AT5G21040 658 / 0.0 F-box protein 2 (.1.2) Lus10022369 [exp] 45 / 1e-05 AT5G45360 40 / 2e-04 F-box family protein (.1) Lus10007767 [exp] 43 / 7e-05 AT5G45360 38 / 0.001 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03048 [poplar] [flax] Herpes_UL92 UL92 family CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.004G236200.1 pacid=42796260 polypeptide=Potri.004G236200.1.p locus=Potri.004G236200 ID=Potri.004G236200.1.v4.1 annot-version=v4.1 ATGACGATCTCAGACGAGGAAGACGAGATTTTGGCCAAGTTCCTGGAATCGGAGGTCCTCTCTGAAGTCTCCGATCAAGATCAGGAGGAGGAGGAGACAG AGGAGGCAAAGAAGGAAGAAGATGAACCAAAAGGCAAGAGAGTTCGTTTCCAGGAAACACAAGAAGAAGAGAAGGAGCAAAATCAGAAAAAGAAAGCTAA TAATAATAATAATAACAAGGGTGAGCAAAGGAGGATAAAGAGTGGAGTTTTGAGCAAGATCCCTCCTGAGCTCTTTCCACACATCCTCAAATTCCTTTCC TCTGAGGATCTCATAGCTTGCTCTCTAGTTTGTAGATTTCTGAATTTCGCAGCCTCTGATGAGTCCTTATGGCGTCGCCTGTATTGCATGCGATGGGGTT TCTTGCCCCCTGCTACAAAGTTATGCGAGAATGCTTGGAAGAAGCTGTACATTCAGCGTGATGAAGAGGACATGGTTAAGCTTGTTAGGAACTGCCCACC GGAGTTTAAAGAATATTATGTTCAAATGAATGCAGCAAAGAGAAGTCAAACACCTCTTCCTTCACAGGTGAAGGATGACCGCATAATTCTTGACAAGACC ATTGCTGATCAGGTGTCTACATGGAAAAGCCGCAGAGGCCTGACTGATAAGGTGGTCACTGACCATGCTTGTTCAGGAGAAACTTGTTCTTATTTCAAGC TTGGAGATGTATTTGTTTGTGAGAAAACTGGAAATGTTCATGTGTGTGATGATACATGCAGAGAAGTCATTATGGACCCTACAAATGAGCTTTTGGTCTG TACAATATCTGGGCATTGCTTTGATAGGTGGCTCTTGCCATCTGAAATGGAACCTGATCCTGACCAGCAACAAGGCGGCTTGACTGATGAAGCAGAGCCA TTCATGGGATCTGGTCGTTTTGCACGAGCTTATCTGCTGGGATATAACTGTGATGATGATAAGGAGCTAGAAGCTGCTTTGAGGTTTTGCTGA
AA sequence Show only first row Show all	>Potri.004G236200.1 pacid=42796260 polypeptide=Potri.004G236200.1.p locus=Potri.004G236200 ID=Potri.004G236200.1.v4.1 annot-version=v4.1 MTISDEEDEILAKFLESEVLSEVSDQDQEEEETEEAKKEEDEPKGKRVRFQETQEEEKEQNQKKKANNNNNNKGEQRRIKSGVLSKIPPELFPHILKFLS SEDLIACSLVCRFLNFAASDESLWRRLYCMRWGFLPPATKLCENAWKKLYIQRDEEDMVKLVRNCPPEFKEYYVQMNAAKRSQTPLPSQVKDDRIILDKT IADQVSTWKSRRGLTDKVVTDHACSGETCSYFKLGDVFVCEKTGNVHVCDDTCREVIMDPTNELLVCTISGHCFDRWLLPSEMEPDPDQQQGGLTDEAEP FMGSGRFARAYLLGYNCDDDKELEAALRFC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45360			F-box family protein (.1)		Potri.004G236200 [exp]	0	1
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.001G006300 [exp]	7.48	0.7292
					Potri.008G100650 [exp]	10.09	0.7155
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Potri.003G183700 [exp]	16.00	0.6790	J8.2
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	20.49	0.6985
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.002G090500 [exp]	22.27	0.6370
AT5G47540			Mo25 family protein (.1)		Potri.016G011100 [exp]	29.74	0.6172
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.001G146600 [exp]	50.00	0.6771
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G192800 [exp]	52.49	0.5719
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	53.31	0.6626
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.015G064000 [exp]	58.58	0.6359

Compare expression of checked genes

Potri.004G236200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.