Plant FIBer expression Database

Potri.004G236300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19190 402 / 3e-135 zinc knuckle (CCHC-type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037279
[exp]
420 / 2e-143 AT4G19190 465 / 1e-159 zinc knuckle (CCHC-type) family protein (.1)
Lus10035690
[exp]
413 / 1e-140 AT4G19190 461 / 6e-158 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10197 Cir_N N-terminal domain of CBF1 interacting co-repressor CIR
Representative CDS sequence
>Potri.004G236300.1 pacid=42794391 polypeptide=Potri.004G236300.1.p locus=Potri.004G236300 ID=Potri.004G236300.1.v4.1 annot-version=v4.1
ATGGAGGGAGAAGGAGGAGGGATAAGGCTGAGCAAGGTATTCGACGATAATAATAAGAAGAGTGGAGGAGGAGGTGATGAGGTTGATTACAAGAACAAAT
CCGGCACTGCCTGGAGCCATTCCTACCTGAACCAGAAGCCATGGCATCCTCTTTCCTATCCTAATCAACGCCGCAAATGGATCGCAGAACAGACCCACGC
TCAACGCCAACGCCGTACTGAAGAAGTTGCTCGCGAGTATGCTCAAGAACAGGAATTCTTCAGGCAAACTGCTCTTATCTCTAAGAAAGAAAAGGAGAAG
ATAGAGATGATGAAAGCTGTTAGCTTCATGTATGTTCGCCCTCCTGGTTACAATGCTGAAAGTGCCAAGGCCGCTGAGATTGCCGATGCTTCACAACCCC
CGGCTGCCGCCGCCTCATCATCCTCCAACTCCATGCATCCCGAATCAGTCCCTGGTGATGACAAGAAGAAACCAAGGCCTAAAGATGCTTTTGGCCGTCC
TTTACCCACCCAAGAAGATTTTCAAGTCCTCACTAATGCTCCGCGCCTGGAGACAGGTGTTCCTGCAAGGGTGAAGCCATTTGGAATTGAAGTGCGCAAT
GTAAAGTGCTTAAGATGCGGAAAGTATGGTCACCAAAGTGGTGATCGTGAATGCCCCCTGAAAGATGTTATAATGCCTAACGAGGAGAGTCGTCTGAAAA
GAGATGATCCCCTGACTGCAATCGTGGCTCAAACAGATCCTAGCGAGCCACTTAAGTGGGAGCTGAAGCAAAAACCAGGATTGAGTCCTCCTCGTGGTGG
TTTTAATCCAGATGATCCCAACCAGCAAATTGTTGCCGAGGACATATTTGATGAATATGGAGGGTTTCTCAGTGGTGGTAATATCCCTGATTTGCTGACT
AACTTCTCTCCAAGTGAACGGAAAAGGAAGTCAAAAAAGAGTAAGCACAAAAAGGAGTCATCGCCAAGTAGAGAAATTAGGGCTTCTGAAGAAAATGGGT
TATCTTCACCTTCCAACAGGGAGGAGAAGAGATCAAAGGAAGAGAAGAAAAGAAAAAAGAAGAAGAAAAGGCTGGATCATTCCGAATCAAGTTCATCCGA
AGATTTCGAGTTTGACAGGCCTTCCAAAAGGAACAGGCACAGGCATTCTTATTCTTCTGAAGATTGTGACTCTGACAAGAATCTTAGGAATAAAAAGAGC
AAGCAAAAGCATTATTACTCTTCCGAATCTGATTCTGACAGGTGTAGAAGTAAGAACAGCAGAAAAAAAGATTCATATTCGACTGTACACTTCCACTCTG
AGAGGCATCATAGAAGTGGCAGGGACAAGCAATCTTATTCTCACTTATCCACTGATTCCAAATCTGATAGGCAGCGTAGGGGTAAAAAGCATTCTCACCG
CCTCTTCCATCGGTCTGATTCATAA
AA sequence
>Potri.004G236300.1 pacid=42794391 polypeptide=Potri.004G236300.1.p locus=Potri.004G236300 ID=Potri.004G236300.1.v4.1 annot-version=v4.1
MEGEGGGIRLSKVFDDNNKKSGGGGDEVDYKNKSGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQRQRRTEEVAREYAQEQEFFRQTALISKKEKEK
IEMMKAVSFMYVRPPGYNAESAKAAEIADASQPPAAAASSSSNSMHPESVPGDDKKKPRPKDAFGRPLPTQEDFQVLTNAPRLETGVPARVKPFGIEVRN
VKCLRCGKYGHQSGDRECPLKDVIMPNEESRLKRDDPLTAIVAQTDPSEPLKWELKQKPGLSPPRGGFNPDDPNQQIVAEDIFDEYGGFLSGGNIPDLLT
NFSPSERKRKSKKSKHKKESSPSREIRASEENGLSSPSNREEKRSKEEKKRKKKKKRLDHSESSSSEDFEFDRPSKRNRHRHSYSSEDCDSDKNLRNKKS
KQKHYYSSESDSDRCRSKNSRKKDSYSTVHFHSERHHRSGRDKQSYSHLSTDSKSDRQRRGKKHSHRLFHRSDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19190 zinc knuckle (CCHC-type) famil... Potri.004G236300
[exp]
0 1
AT2G44430 DNA-binding bromodomain-contai... Potri.001G229300
[exp]
1.00 0.8007
AT5G25280 serine-rich protein-related (.... Potri.006G060800
[exp]
5.47 0.7692
AT2G42620 PPS, PP2, ORE9,... PLEIOTROPIC PHOTOSIGNALING, OR... Potri.014G142600
[exp]
8.36 0.7309 MAX2.2
AT2G36330 Uncharacterised protein family... Potri.015G075100
[exp]
8.48 0.7276
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Potri.005G142600
[exp]
9.38 0.7400
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.013G028700
[exp]
10.19 0.7266
AT3G14830 unknown protein Potri.011G106600
[exp]
13.78 0.7619
AT4G03030 Galactose oxidase/kelch repeat... Potri.002G041900
[exp]
14.00 0.7456
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Potri.001G026000
[exp]
15.23 0.7652
AT4G11560 bromo-adjacent homology (BAH) ... Potri.003G127400
[exp]
15.93 0.7904

Potri.004G236300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.