Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31770 971 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 640 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 594 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G06530 544 / 0 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G71960 519 / 5e-177 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G52310 518 / 6e-175 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT3G13220 444 / 1e-147 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 270 / 2e-80 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55100 236 / 1e-68 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G13580 232 / 2e-66 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046800 [exp] 1169 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 681 / 0 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G404000 [exp] 650 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 637 / 0 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 548 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.013G111900 [exp] 536 / 0 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 535 / 0 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.006G199500 [exp] 503 / 8e-170 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 449 / 1e-149 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034775 [exp] 1052 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 1018 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 998 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 956 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025597 [exp] 641 / 0 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 639 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10034387 [exp] 632 / 0 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10025596 [exp] 628 / 0 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 605 / 0 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10015994 [exp] 540 / 0 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.004G236500.1 pacid=42794356 polypeptide=Potri.004G236500.1.p locus=Potri.004G236500 ID=Potri.004G236500.1.v4.1 annot-version=v4.1 ATGCCTCTCAACTACGTAGTTCCCAAGCCAGATCACAACAGTGCTCCAACGGAAGGTCTGCCAAGGATGCCTGAAACCAACAACAGGGCTGTCCTCTCCT ACCCAGGACAAGCCAATTCACAATCTGTGCTCCAACTCACCATATATCCTACAACTTTGAAGTTTGAGGAGGTGGTGTACAAGGTTAAACTGGATCAGAA GGGATTGTGCTGGGGTGGCACTTGGAGTAGCCGAGAAAAGACCATACTGAATGGGATAACGGGTATGGTTTGTCCAGGGGAGATCCTAGCAATGCTAGGT CCATCTGGGAGTGGCAAAACCACCCTCCTTACGGCTCTAGGAGGTCGTCTCAGTGGTAAGCTATCCGGAAAGATCACATACAACGGGCAGCCTTTTTCGG GTACCATGAAACGACGCACAGGCTTCGTTGCTCAGGACGACATTCTGTACCCGCATCTAACAGTGTCTGAAACTCTCCTATTCACTGCACTGCTAAGGCT ACCCAAAACGTTAACCCGGGAGGAGAAAGCTCAGCACGTGGAACGAGTTATAGCTGAACTGGGATTGAGTCAGTGCCGGAACAGCATGATAGGGGGCCCA CTCTTTAGAGGGATATCAGGAGGGGAGAAGAAGAGGGTTAATATTGGTCAAGAAATGCTAATCAATCCAAGCTTGCTACTACTAGATGAGCCCACATCAG GTCTGGACTCGACAACAGCTCAAAGGATCCTGACCACGATCAAACGGCTTGCGAGTGGGGGACGAACTGTTGTCACCACCATTCACCAGCCCTCAAGCAG ACTTTACCATATGTTTGATAAGGTAGTCTTGCTCTCTGAGGGACGCCCCATCTACTATGGTCCTGCATCTGCAGCCTTGGATTATTTTTCCTCCATCGGA TTTTCTACGTCCATGACTGTCAATCCTGCTGATCTCTTACTTGATCTTGCAAATGGCATTGGTCCTGATTCTAAAAATGCCACTGACTACGGTGAGAACA CGGAACAAGAACAGAAGTCAGTGAGGGAAGCTCTCATTTCTGCATATGAGAAGAACATTTCTACCAGACTGAAAGCTGAGCTTTGCAATTTGGACCCAAA TAACTACTATTATACAAAAGATGCCTCTGAAAGAAATGAAAAAAAGTCAGAGAAATGGTGCACAAGCTGGTGGCATCAGTTCAAAGTGCTCTTTCAGCGG GGGCTGAGAGAGCGGAGGTACGAATCCTTCAACAGGCTAAGAATTTTTCAAGTCCTCAGTGTCAGTATACTTGGTGGACTCCTTTGGTGGAAAACACCAA CTTCTCACATTGAAGACCGAATTGCATTGCTCTTCTTCTTCTCTGTGTTCTGGGGCTTTTACCCACTCTACAATGCCGTTTTCACATTTCCCCAAGAAAG AAGGATGTTGGTTAAGGAACGAGCATCAGGAATGTATCATCTTTCATCCTACTTCCTGGCTAGAACCTTTGGAGATCTGCCATTAGAGCTTGCGCTCCCA ACTGCATTTGTCTTCATAATCTATTGGATGGGCGGACTTAAAGCCGATCCTATAACTTTCATCCTTTCCCTCCTTGTTGTTCTTTACAGCGTTCTAGTCT CTCAAAGTCTTGGATTGGCTATTGGTGCTATTCTAATGGACGTAAAACAAGCCACTACATTAGCTTCGGTTACAACTCTGGTTTTCCTCATTGCCGGAGG ATACTACGTCCAACAAATCCCTCCTTTCATAGTATGGCTGAAGTACTTAAGTTACAGCTACTACTGTTACAAGCTTCTTCTTGGTGTCCAATACAATGAG GATGATCACTACGAGTGCTCAAAGGGAGTCTTGTGCCGGGTTGGAGATTTTCCTGCTGTCAAATCAATGGGTCTGAACCATTTATGGGTAGACGTGGCAA TTATGGCCCTGATGTTAGTGGGTTATCGAATGGTCGCTTATCTGGCACTGCATCGCGTGCAGCTGAGGTGA
AA sequence Show only first row Show all	>Potri.004G236500.1 pacid=42794356 polypeptide=Potri.004G236500.1.p locus=Potri.004G236500 ID=Potri.004G236500.1.v4.1 annot-version=v4.1 MPLNYVVPKPDHNSAPTEGLPRMPETNNRAVLSYPGQANSQSVLQLTIYPTTLKFEEVVYKVKLDQKGLCWGGTWSSREKTILNGITGMVCPGEILAMLG PSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGTMKRRTGFVAQDDILYPHLTVSETLLFTALLRLPKTLTREEKAQHVERVIAELGLSQCRNSMIGGP LFRGISGGEKKRVNIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLASGGRTVVTTIHQPSSRLYHMFDKVVLLSEGRPIYYGPASAALDYFSSIG FSTSMTVNPADLLLDLANGIGPDSKNATDYGENTEQEQKSVREALISAYEKNISTRLKAELCNLDPNNYYYTKDASERNEKKSEKWCTSWWHQFKVLFQR GLRERRYESFNRLRIFQVLSVSILGGLLWWKTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLVKERASGMYHLSSYFLARTFGDLPLELALP TAFVFIIYWMGGLKADPITFILSLLVVLYSVLVSQSLGLAIGAILMDVKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGVQYNE DDHYECSKGVLCRVGDFPAVKSMGLNHLWVDVAIMALMLVGYRMVAYLALHRVQLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Potri.004G236500 [exp]	0	1
AT3G49810			ARM repeat superfamily protein...		Potri.006G277700 [exp]	1.41	0.8519
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G173400 [exp]	2.00	0.8497
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	4.79	0.7916
AT5G63710			Leucine-rich repeat protein ki...		Potri.001G306000 [exp]	9.21	0.7956
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.006G095500 [exp]	17.32	0.7857	UCP2.2
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.003G205000 [exp]	18.54	0.8255
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.010G095500 [exp]	19.82	0.8370
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	22.91	0.7136
AT1G03670			ankyrin repeat family protein ...		Potri.019G101700 [exp]	23.74	0.8217
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G104800 [exp]	24.49	0.7753

Compare expression of checked genes

Potri.004G236500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.