Plant FIBer expression Database

Potri.004G236600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31780 997 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035691
[exp]
1103 / 0 AT1G31780 995 / 0.0 unknown protein
Lus10037280
[exp]
762 / 0 AT1G31780 686 / 0.0 unknown protein
Lus10037281
[exp]
560 / 0 AT1G31780 530 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF06419 COG6 Conserved oligomeric complex COG6
Representative CDS sequence
>Potri.004G236600.2 pacid=42793893 polypeptide=Potri.004G236600.2.p locus=Potri.004G236600 ID=Potri.004G236600.2.v4.1 annot-version=v4.1
ATGGGAACGCCGGTGGGATTGGCGCCGGGACTTTCTCGGAAGCTGAAGAAGGTGCTGGAATGTCGGACGGACAGTCCGGATCTGGTGGCTTCGCTCAATA
CTCTGTCCGCTTTCTACAACGAAAACACCCCTCAGTCACGTCGCCACCTCAGATCCACCATCGAGGACCGCTCTCTCCACCTCAATCACGAGTTTCTTCA
AGCCTCCCACACCGCTCAGCAAGCTTTGGATCATGTCGAGGAGGAGGTTAACGCCCTGGCCGAATGCTGCGATAATATTGCCAAGGCTTTGAGTAGTTGT
AGTGCAAGTACGGGTGATATTATCAGCACCACCGAAAGGCTCAAAGAGGAACTAGAAATCACCACTCAGAGACAAGACATTGTATCCTGCTTCCTTCGCG
ATTACCAGCTCTCAAATCAAGAGATCAATGCTCTTAGGGATGAGGATCTCGATGACAACTTCTTCAAGGCTCTTTCTCATGTTCAACAAATCCACGCCAA
CTGCAAGGTTCTGCTGCGTACCCACCATCAGCGTGCTGGTTTGGAGCTCATGGATATGATGGCTGTCTACCAAGAAGGAGCCTATGAGCGCCTTTGCAGG
TGGGTTCAGGCAGAGTGTAGGAAATTGGGTGACAGTGATAATCCTGAAGTTGATGAGCTTTTGAAAACAGCTGTCCGTTGGCTCAAGGAAAGGCCTGCTC
TTTTTAAGTACTGTGCAGAAGAGGTAGCAAATATGAGGCATAATGCATTGTTTAGAAGATTCATAAGCGCTCTTACACGTGGAGGACCTGGTGGAATGCC
AAGACCTATTGAGGTTCATGCTCATGATCCGTTAAGATATGTAGGTGACATGCTAGGATGGTTACATCAGGCCTTGGCATCTGAACGAGAACTTGTTCTT
GTCCTACTCGACCCAGATGCTTTGGTAGATACCGTATCAACCGTAAACCGATTCTCCAAGAGTTTGGAGAATGGCACTGGAAAGACAGAATCTGACCTAA
CATATGTTCTGGATAGAATTTTCGAAGGAGTTTGCCGGCCATTTAAAGTTAGAGTTGAACAAGTTTTGCAGTCACAACCTAGTCTCATAATTGCATGTAA
ACTCAGTAACACACTGGAATTTTACAGCTACACTATCTCTGATTTACTTGGGAGAGATACAGTTCTGTGTAATACACTTTGGGCACTGAGGGATGCTGCT
CAGAAAACTTTTTTCGATATTCTGAAAAGTCGGGGAGAGAAGCTTTTACGATATCCTCCCCTTGTTGCTGTTGATCTTTCCCCACCAAAAGCAGTGAGGG
AAGGAGTCTCGGTCCTGCTTGAAATAATTGAAACCCACAACAGCATGATGGTTACTGTTACAGGGAAGAAGCCTGATTTTGATCCAGTGATCTCTGCTTT
ACTTGACCCTATCATTCAGATGTGTGAGCAAGCTGCAGAGGCACACAAGTCCAAGGGTGTTAGCCATGCATCGAGAAGAAGAACAAGTTCTGACTCGGGC
CAAATTAGTAAATCATCGGTCGATGCTCTCTTGTCAAATAACAGCCCTGCAACATCGTCCAAGAATAGTGAAACTCCTTCCAAAATATTCCTCATCAATT
GTTTATGCGCCATCCAACAACCGCTATCCAGGCACAAGGTTGCAGCTGGCTATGTAAAGAAACTGGGAGCAATGATTGACAATCACATGCATTCACTTGT
AGAAAAGGAAGCCGAGGCCATTTTAAGTAGATGTGGCTTGTCGCAAAAGATGCACTACTTCCAGAAGTCACTTAACGAGGAGGGCAGTACAGCAACTGGC
ACCCCTCTGGTGGAAATTGAAGACACCTCTCCAGTGTCTCTTTCAGAATGTTTGAGGGCATTCTTTGGGCTTATTATAGGAAATGAGAGTTCCCTTCCTG
AATTTGAGCAGATGCAGGTTCCAAAGTTGCGCTCTGAAGCTGGTATACAGGTGGCTCGGTCTCTTGCTGAAGCTTATGCGCTTATTTACACGGCAATAAT
GGATCCCAAGAATGGCTATGCAGAGCCCCAATCACTGGCAAGGCACCCTCCGGATCAGATACGGATAATTTTAGGCCTATGA
AA sequence
>Potri.004G236600.2 pacid=42793893 polypeptide=Potri.004G236600.2.p locus=Potri.004G236600 ID=Potri.004G236600.2.v4.1 annot-version=v4.1
MGTPVGLAPGLSRKLKKVLECRTDSPDLVASLNTLSAFYNENTPQSRRHLRSTIEDRSLHLNHEFLQASHTAQQALDHVEEEVNALAECCDNIAKALSSC
SASTGDIISTTERLKEELEITTQRQDIVSCFLRDYQLSNQEINALRDEDLDDNFFKALSHVQQIHANCKVLLRTHHQRAGLELMDMMAVYQEGAYERLCR
WVQAECRKLGDSDNPEVDELLKTAVRWLKERPALFKYCAEEVANMRHNALFRRFISALTRGGPGGMPRPIEVHAHDPLRYVGDMLGWLHQALASERELVL
VLLDPDALVDTVSTVNRFSKSLENGTGKTESDLTYVLDRIFEGVCRPFKVRVEQVLQSQPSLIIACKLSNTLEFYSYTISDLLGRDTVLCNTLWALRDAA
QKTFFDILKSRGEKLLRYPPLVAVDLSPPKAVREGVSVLLEIIETHNSMMVTVTGKKPDFDPVISALLDPIIQMCEQAAEAHKSKGVSHASRRRTSSDSG
QISKSSVDALLSNNSPATSSKNSETPSKIFLINCLCAIQQPLSRHKVAAGYVKKLGAMIDNHMHSLVEKEAEAILSRCGLSQKMHYFQKSLNEEGSTATG
TPLVEIEDTSPVSLSECLRAFFGLIIGNESSLPEFEQMQVPKLRSEAGIQVARSLAEAYALIYTAIMDPKNGYAEPQSLARHPPDQIRIILGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31780 unknown protein Potri.004G236600
[exp]
0 1
AT1G13180 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDO... Potri.010G051500
[exp]
1.41 0.9151 ARP3.2
AT4G14960 TUA6 Tubulin/FtsZ family protein (.... Potri.001G289500
[exp]
4.58 0.9291 TUA2.1
AT2G28250 NCRK Protein kinase superfamily pro... Potri.009G010400
[exp]
6.32 0.9071
AT1G73430 sec34-like family protein (.1.... Potri.010G138900
[exp]
7.34 0.9017
AT5G35730 EXS (ERD1/XPR1/SYG1) family pr... Potri.007G121400
[exp]
9.48 0.9057
Potri.009G092300
[exp]
15.74 0.9129 AGP9.1
AT3G24040 Core-2/I-branching beta-1,6-N-... Potri.001G053800
[exp]
18.16 0.8808
AT5G11710 ENTH/VHS family protein (.1) Potri.006G234100
[exp]
19.28 0.9132
AT4G30260 Integral membrane Yip1 family ... Potri.006G169200
[exp]
19.33 0.8905
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Potri.005G026900
[exp]
20.44 0.8778

Potri.004G236600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.