Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 840 / 0 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 161 / 2e-42 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 162 / 3e-42 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 155 / 4e-40 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 154 / 6e-40 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079900 [exp] 300 / 7e-93 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 150 / 2e-38 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 134 / 4e-33 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 119 / 5e-28 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 85 / 5e-17 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.019G031000 [exp] 72 / 8e-13 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 64 / 1e-10 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.004G195600 [exp] 62 / 9e-10 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037285 [exp] 966 / 0 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 964 / 0 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 963 / 0 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 711 / 0 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 259 / 2e-77 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 255 / 7e-77 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 148 / 1e-37 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 148 / 2e-37 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 88 / 5e-18 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 80 / 2e-15 AT5G18280 558 / 0.0 apyrase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01150 [poplar] [flax] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Potri.004G236900.6 pacid=42796023 polypeptide=Potri.004G236900.6.p locus=Potri.004G236900 ID=Potri.004G236900.6.v4.1 annot-version=v4.1 ATGGTGTTAGGAAGAATATCGGATCTAGTTTCTGCTGCAACAAGTCGTCTTTCACCTGCAAAGTCTTCTGCTTTTCCTTATATGCCAACTGGATTGTCAC CTCCACATGAAACCATTGATCATGGCTTCACCTTTTCCAACTCTGCACCCAAGAACAACAACATGCGGCTTTCTTCATCTCTCCAAGATTTCTCATCATA TCATCATCTTGATCTTGAACAAGGTGATATCAACCTTGGCGTTGGCAGGAAACCTCATTCCCTGCAGAGAGAAAATGCCGGGTCAAGTTTCTCTAAGGAG AAAGCATTGCCTTGTGGAACACCAGTTTTGCGGAGGAAGGGGCTGCAACTGCTCTTGATTTTCTTGTGCCTACTACTCTTTGCTTTTTTAACTTATCTGG TTACAGCATATGTTTATTCTTATTGGTCTCAAGGAGCATCCAGGTTCTATGTTGTTCTTGACTGTGGAAGTACTGGAACTAGAGTCTATGTATATCAGGC AACGATTGATCACAACTCAGATGGTCTCCCATTTGTCCTGAAATCATACACAGAAGGTGTTTCAAGAAAGCCCAGTGGACGTGCATATGATAGAATGGAG ACCGAGCCTGGGCTTCACACATTGGTACATAATACGTCTGGCTTAAAGGCTGCCATAAACCCGCTTGTTCGATGGGCTGAGAAGCAAATTCCCCAGCAGG CGCATAAGACCACCTCCCTTTTTCTTTATGCTACAGCCGGAGTTCGTAGACTTCCCAGTGCAGATTCAAAATGGCTTCTAGACAAGTCATGGTCTATTCT GAAGGAATCACCTTTCTTGTGCCAAAGAGAATGGATTAAGATCATCAGTGGCATGGAGGAAGCTTACTATGGATGGATAGCCCTTAACCATCGCACAGGT GTGCTAGGAGCAAGCCCCAAGAAAGCAACATTTGGAGCACTTGACATGGGTGGCTCATCGTTACAAGTTACTTTTGAGAGTGAGGAACATGTCCATAATG AGACTAGCTTAAGTCTTAGAATTGGAGCAGTTAATCATCATCTCAGTGCTTATTCCCTTGCGGGCTATGGTTTAAACGATGCATTTGACAGGTCTGTTGC CCATATCTTAAAGAAGCCTTCTAGTGCTGATCTAGTTAGTGGTAACATAGAAATTAGACACCCTTGCCTGCAGTCTGGCTATAAAGAGCAATACATCTGT TCTCAGTGTTTTTCTAAACAACAAGATGGAGCAAGTCCTGTTATCAGAGGAAGAAATTTGGGTAACCGAGTCAAGTCAGGACTTCCTGTGCAGCTTATTG GTGCCCCAAATTGGGAAGAATGCAGTGCACTTGCCAAAATTGCTGTTAATTTGTCTGAATGGTCTAATCAAGATCCTGGAATTGATTGTGATTTGCAACC TTGCGCTCTTCCTCCAAATCTCCCACGTCCTTATGGTCACTTCTATGGTATGTCGGGCTTTTTTGTGGTTTATCGGTTCTTTAATCTGACATCAGAAGCT GCACTTGATGATGTTTTGGAAAAGGGTCGAGAATTCTGTGAAAAGAATTGGGAAATTGCAAAGAACAGTGTTCCTCCACAGCCCTTTATTGAACAATACT GTTTCAGGGCACCATATATAGTGTTACTGTTGAGAGAGGGCTTACACATCACAGAGAACCAAATTATCATTGGTTCTGGAAGTATTACTTGGACGCTTGG GGTTGCCCTGTTGGAAGCTGGGAAAACATTTTCAACTAGATTGAAGCTACATGACTATGAAGTACTCCAGATGAAGATACATCCAGTGGTTCTTATTACC ATTTTGCTTATATCATTGATTTTACTTGTTTGGGCATTATCATGTTATGGCAATTGGATGCCAAGATTTTTCTGGAGACCATATTTCTTGCTTTTCAGGA ATAACAGTACATCTGCCACATCTGTTCTTAGCATCCAATCTCCTTTTCGATTCCGACGTTGGAGTCCTATCAGTTCTGGGGATGGACGTGTAAAGATGCC ACTGAGTCCAACAGTTGCAGGTAGTCAGCAAAGATCATTTGGCTTGGGAGATAGTCTAGGTGATAGTGGCATCCAGCTCATGGAATCTTCCCTACACCCA TCAACTAACAGTGTTTCACACAGTTATTCCTCGAGTAGCTTAGGACAAATGATTGACAGCAGTAGCATGGGTTCCTTCTGGACCCCACATAGAGGTCAGA TGCGACTTCAAAGCAGGAGATCACAATCTCGAGAAGACCTCAATTCTTCATTGGCTGATGCACACATGACAAAGGTTTAG
AA sequence Show only first row Show all	>Potri.004G236900.6 pacid=42796023 polypeptide=Potri.004G236900.6.p locus=Potri.004G236900 ID=Potri.004G236900.6.v4.1 annot-version=v4.1 MVLGRISDLVSAATSRLSPAKSSAFPYMPTGLSPPHETIDHGFTFSNSAPKNNNMRLSSSLQDFSSYHHLDLEQGDINLGVGRKPHSLQRENAGSSFSKE KALPCGTPVLRRKGLQLLLIFLCLLLFAFLTYLVTAYVYSYWSQGASRFYVVLDCGSTGTRVYVYQATIDHNSDGLPFVLKSYTEGVSRKPSGRAYDRME TEPGLHTLVHNTSGLKAAINPLVRWAEKQIPQQAHKTTSLFLYATAGVRRLPSADSKWLLDKSWSILKESPFLCQREWIKIISGMEEAYYGWIALNHRTG VLGASPKKATFGALDMGGSSLQVTFESEEHVHNETSLSLRIGAVNHHLSAYSLAGYGLNDAFDRSVAHILKKPSSADLVSGNIEIRHPCLQSGYKEQYIC SQCFSKQQDGASPVIRGRNLGNRVKSGLPVQLIGAPNWEECSALAKIAVNLSEWSNQDPGIDCDLQPCALPPNLPRPYGHFYGMSGFFVVYRFFNLTSEA ALDDVLEKGREFCEKNWEIAKNSVPPQPFIEQYCFRAPYIVLLLREGLHITENQIIIGSGSITWTLGVALLEAGKTFSTRLKLHDYEVLQMKIHPVVLIT ILLISLILLVWALSCYGNWMPRFFWRPYFLLFRNNSTSATSVLSIQSPFRFRRWSPISSGDGRVKMPLSPTVAGSQQRSFGLGDSLGDSGIQLMESSLHP STNSVSHSYSSSSLGQMIDSSSMGSFWTPHRGQMRLQSRRSQSREDLNSSLADAHMTKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.004G236900 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	1.73	0.9034
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	2.44	0.8938
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	5.29	0.8735
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	6.92	0.8670
AT5G32470			Haem oxygenase-like, multi-hel...		Potri.013G049300 [exp]	10.09	0.8398
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	10.95	0.8807
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	12.72	0.8709
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	15.42	0.8651
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	15.96	0.8249
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	16.88	0.8201

Compare expression of checked genes

Potri.004G236900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.