Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 544 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 497 / 3e-169 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 474 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 470 / 8e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 469 / 6e-157 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 452 / 7e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 447 / 9e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 442 / 2e-148 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 436 / 4e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 435 / 6e-144 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 540 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G231200 [exp] 508 / 3e-174 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 498 / 4e-170 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 500 / 1e-169 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 496 / 4e-169 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 493 / 5e-168 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 495 / 2e-167 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 494 / 5e-166 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 488 / 2e-164 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017583 [exp] 689 / 0 AT5G66520 481 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 529 / 0 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 526 / 0 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 516 / 2e-176 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 505 / 4e-172 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 482 / 9e-164 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 481 / 5e-163 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 473 / 8e-160 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 472 / 3e-158 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 471 / 6e-158 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G237000.1 pacid=42795610 polypeptide=Potri.004G237000.1.p locus=Potri.004G237000 ID=Potri.004G237000.1.v4.1 annot-version=v4.1 ATGAACATGAGCTCCTCCTCCTCCTCCGTTCAAGTTCAAATGCATGTAGAACCCTTTCATTTTGAAAAATGCCAATCCATGTCTCAGCTGAGGCAATATC ATTCACAGATCATCCGGCTCGGCCTCTCCTCTCATAACCATCTCATTCCCCCACTCATAAACTTCTGTGCCCGCGCCAGCACCTCCGATGCTTTAACCTA CGCTCTCAAACTGTTCGACTCAATTCCCCAACCAGATGCTTTTCTTTACAACACCATCATTAAAGGATTCCTTCATTCCCAACTACTACCTACTAACTCC ATCCTTCTTCTCTACTCTCACATGTTGCAAAACTCCGTTTTACCCAACAACTTCACTTTCCCCTCTCTTCTCATAGCCTGCAGAAAGATCCAACACGGGA TGCAAATCCATGCCCATCTTTTCAAGTTCGGGTTTGGAGCTCATAGTGTCTGTCTCAACAGTCTGATTCATATGTATGTCACCTTTCAAGCATTGGAGGA AGCCAGGAGGGTTTTCCATACCATCCCACACCCTGATTCTGTCTCCTGGACTAGTTTGATTTCCGGGTATTCAAAGTGGGGATTAATTGATGAGGCTTTT ACCATCTTCCAACTCATGCCTCAGAAAAATTCTGCTTCTTGGAATGCCATGATGGCTGCATATGTTCAGACCAACCGCTTTCATGAAGCGTTTGCTTTGT TTGATAGGATGAAAGCAGAGAATAATAATGTGTTGGATAAGTTTGTGGCAACCACTATGTTGTCTGCTTGTACCGGATTAGGTGCTTTAGATCAAGGGAA GTGGATACACGAGTACATTAAGAGGAATGGGATTGAATTGGATTCCAAACTCACTACTGCAATTGTTGACATGTATTGCAAATGTGGTTGCTTGGAGAAG GCTTTGCAAGTTTTTCACAGCTTGCCTTTGCCTTGTAGATGGATTTCTTCCTGGAACTGCATGATTGGGGGGTTAGCAATGCATGGTAATGGAGAGGCTG CAATTCAACTTTTCAAAGAGATGGAGAGACAGAGGGTAGCTCCTGATGACATCACTTTTCTGAATCTCCTCACTGCCTGTGCGCATTCAGGGTTAGTTGA GGAGGGGCGTAACTACTTCAGTTACATGATCCGAGTTTATGGAATTGAGCCCAGAATGGAGCACTTTGGATGCATGGTTGATTTACTTGGAAGAGCTGGA ATGGTGCCGGAGGCTAGAAAGCTTATCGATGAGATGCCTGTGAGTCCTGATGTCACTGTTCTAGGCACTCTTCTAGGAGCCTGTAAGAAGCACAGAAACA TTGAGTTGGGAGAGGAAATAGGGAGAAGAGTTATCGAACTAGAACCTAACAATAGTGGACGCTATGTATTGTTAGCCAACTTATATGCCAACGCTGGTAA ATGGGAAGATGCTGCTAAAGTGAGGAAACTGATGGATGATAGGGGAGTAAAGAAGGCTCCGGGCTTTTCCATGATTGAGCTACAAGGTACTGTTCATGAA TTTATCGCTGGTGAAAGAAATCATCCTCAAGCTAAAGAATTGCATGCCAAAGTTTATGAGATGCTGGAACATCTAAAATCTGTTGGCTATGTGGCTGATA CCAATGGAGTACTGCATGGCCATGACTTTGATGAGGAGGAAGATGGAGAGAACCCATTATACTATCACAGCGAGAAACTTGCCATTGCCTTTGGGCTATC AAGGACTAAACCTGGGGAAACTCTTCGTATATTAAAAAATCTGCGGATCTGTGAAGATTGTCACCATGCATGCAAACTTATTTCAACGGTTTTTGATCGA GAAATAATTGTAAGAGATAGAACTCGGTTTCACCGTTTTAAAATGGGCCAGTGCTCCTGCCAGGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.004G237000.1 pacid=42795610 polypeptide=Potri.004G237000.1.p locus=Potri.004G237000 ID=Potri.004G237000.1.v4.1 annot-version=v4.1 MNMSSSSSSVQVQMHVEPFHFEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNS ILLLYSHMLQNSVLPNNFTFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAF TIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEK ALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAG MVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHE FIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDR EIIVRDRTRFHRFKMGQCSCQDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.004G237000 [exp]	0	1
AT3G03630		CS26	cysteine synthase 26 (.1)		Potri.019G045800 [exp]	1.41	0.9800
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Potri.001G028500 [exp]	2.44	0.9799
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.016G074800 [exp]	3.31	0.9598
AT4G01650			Polyketide cyclase / dehydrase...		Potri.014G110600 [exp]	3.46	0.9717
AT5G63100			S-adenosyl-L-methionine-depend...		Potri.015G082432 [exp]	4.24	0.9693
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.008G058800 [exp]	4.24	0.9635
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	4.47	0.9696
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Potri.018G092400 [exp]	4.58	0.9686
AT4G24175			unknown protein		Potri.005G240800 [exp]	5.65	0.9673
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	5.65	0.9701

Compare expression of checked genes

Potri.004G237000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.