Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	N21L2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19185 476 / 4e-168 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 454 / 1e-159 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G45870 438 / 1e-153 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 186 / 3e-55 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 183 / 3e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G53210 170 / 3e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 135 / 5e-36 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 135 / 8e-36 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 133 / 2e-35 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 128 / 2e-33 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233600 [exp] 202 / 2e-61 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 199 / 7e-60 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 188 / 3e-56 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 178 / 5e-52 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 152 / 1e-42 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G085100 [exp] 140 / 6e-38 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 140 / 8e-38 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 134 / 1e-35 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 132 / 9e-35 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034776 [exp] 517 / 0 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 508 / 0 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10035693 [exp] 483 / 9e-171 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10037284 [exp] 474 / 3e-168 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035694 [exp] 465 / 4e-164 AT4G19185 465 / 4e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 197 / 2e-59 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 192 / 3e-57 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 179 / 4e-52 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10030168 [exp] 146 / 5e-40 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 145 / 1e-39 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.004G237100.1 pacid=42796189 polypeptide=Potri.004G237100.1.p locus=Potri.004G237100 ID=Potri.004G237100.1.v4.1 annot-version=v4.1 ATGACAACATCAGGAGGAATTGGAGGAGGAGAGGCATGGAAGGCTCATACGGCGATGGCGATGGTGCAGGTATTCAATGGAGGATATCATGTCATTACAA AAGTGGCTCTCAATGTTGGGGTCAATCAGCTCGTTTTCTGTGTCTATCGGGATCTTCTTGCCCTCGCTATCCTAGCCCCTGTTGCCTGTTTTCGCGAAAG GAGAATTCGACAGCCTTTGACTAAACCACTCCTCTTGTCGTTCTTCTTTCTTGGCTTAACAGGGATATTTGGCAACCAGCTTTTATTTCTTCTTGGTCTT AGCTACACAAATCCAACTTATGCTGCTGCCATCCAGCCTGCAATTCCAGTTTTTACCTTTATCCTGGCTGTGATTATGGGTACTGAAAGACTGAATTTGT TTACAACTGAAGGTCAAGCAAAGGTCGGAGGTATCCTTGTCTGTGTTTCTGGTGCCATAGTGATGGTTCTCTTCCGTGGTCCTTCCGTATTTGGGTTTAA GGAAGCAGACTTTGTGTCAAGTGAAATAAGTGCTAGGGGTCAACCAGAGCCTGCTGGATGGTTCTTGTCTAGCTTGTTGGACTTTGGCCTGGATAATTGG CACCTTGGAGTTTTATGCTTAATAGGGAATTGCATGTGCATGGCTGTTTTCCTAGCCATTCAGGCTCCGGTTCTAGCGAAGTATCCAACCAGTCTTTCAG TCACAGCATATTCATATGCTTTTGGAGCTCTGTTGATGGTAGTAACAGCATTCTTTATGACCAATGAATCAACAGACTGGAGTTTGACGCGATCTGAATG TTTTGCAGTCATCTATGCAGGGGTTGTTGCATCTGCCATTAATTATGGCCTGCTGACATGGTCCAACAAGATCTTGGGGCCTGCTTTGGTTGCACTTTAC AATCCACTTCAACCTGCAGCATCTGCCTGTCTGTCAAAAATATTTCTTGGAAGCCCTATTTATTTGGGAAGCCTTATAGGAGGATTCCTGATCATTTCTG GCCTTTATTTGGTCACCTGGGCATCATATAGAGAAAGACAAACAGTTCCGGGGCTCATCCATCACATTAGTGCCCGGGCATCGGAGCCATTCATTCACAA AGAAGCAGCAATTAACAAGGGTGCGTACCATAGAGGATACATCTTTCCTAGTGCCTCTTCCCCGACAAAATCTATTGATTAA
AA sequence Show only first row Show all	>Potri.004G237100.1 pacid=42796189 polypeptide=Potri.004G237100.1.p locus=Potri.004G237100 ID=Potri.004G237100.1.v4.1 annot-version=v4.1 MTTSGGIGGGEAWKAHTAMAMVQVFNGGYHVITKVALNVGVNQLVFCVYRDLLALAILAPVACFRERRIRQPLTKPLLLSFFFLGLTGIFGNQLLFLLGL SYTNPTYAAAIQPAIPVFTFILAVIMGTERLNLFTTEGQAKVGGILVCVSGAIVMVLFRGPSVFGFKEADFVSSEISARGQPEPAGWFLSSLLDFGLDNW HLGVLCLIGNCMCMAVFLAIQAPVLAKYPTSLSVTAYSYAFGALLMVVTAFFMTNESTDWSLTRSECFAVIYAGVVASAINYGLLTWSNKILGPALVALY NPLQPAASACLSKIFLGSPIYLGSLIGGFLIISGLYLVTWASYRERQTVPGLIHHISARASEPFIHKEAAINKGAYHRGYIFPSASSPTKSID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19185			nodulin MtN21 /EamA-like trans...		Potri.004G237100 [exp]	0	1	N21L2
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.001G261000 [exp]	6.85	0.8563
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075525 [exp]	10.00	0.9112
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.003G202900 [exp]	18.70	0.8839	Pt-ABI8.1
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Potri.008G132500 [exp]	24.00	0.8867
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	24.41	0.8905	Pt-FLA11.1
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	26.66	0.8932
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	26.73	0.8846
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	33.46	0.8874	PtrSuSY1,Pt-SUS1.2
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.001G047100 [exp]	33.46	0.8819	GOS11.1
AT5G27490			Integral membrane Yip1 family ...		Potri.013G023400 [exp]	35.15	0.8890

Compare expression of checked genes

Potri.004G237100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.