Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26742 925 / 0 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22330 479 / 1e-160 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 475 / 5e-159 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G62190 346 / 2e-108 PRH75 DEAD box RNA helicase (PRH75) (.1) AT3G01540 260 / 6e-77 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 261 / 7e-77 DEAD box RNA helicase family protein (.1.2) AT1G55150 249 / 3e-74 DEA(D/H)-box RNA helicase family protein (.1) AT1G31970 246 / 3e-72 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 242 / 2e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G06480 250 / 3e-70 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G000500 [exp] 1126 / 0 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 473 / 2e-158 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 471 / 2e-157 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.015G133400 [exp] 347 / 6e-109 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.012G131000 [exp] 342 / 6e-107 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.001G347100 [exp] 256 / 8e-74 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 247 / 4e-73 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 253 / 5e-73 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 244 / 1e-71 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001057 [exp] 950 / 0 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 878 / 0 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10035410 [exp] 483 / 6e-162 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 481 / 1e-161 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 479 / 6e-160 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 476 / 2e-158 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027388 [exp] 346 / 3e-108 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 340 / 5e-106 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 332 / 9e-103 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 306 / 4e-93 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0221 [poplar] [flax] RRM PF08152 [poplar] [flax] GUCT GUCT (NUC152) domain
Representative CDS sequence Show only first row Show all	>Potri.005G000100.1 pacid=42802450 polypeptide=Potri.005G000100.1.p locus=Potri.005G000100 ID=Potri.005G000100.1.v4.1 annot-version=v4.1 ATGGCTTCTACTTCTACTGTAATTGGGGTTTCTTCTATCTTCCATTCAAAGACCACTACTAGTTGTAGAAGAGCAGCAGCAGCGACAACAACAACAGCCG CAAATTTGTCATCAGCTATGCCACTTTCTTCCTCGTCTGCTTCTTTTTTGTCTGAAAAGCCTCCCCACTTCAATTCTTTGATAGCCAAAACACAACTTAG CTTTAAACACAGCCTTATTATTAATACCAACAGCACCTTCACTCCACCTAGTGCTATCGCTACCCCCAATCCCATCCTCAGCGAAGAGGCCTTCAAAGGG CTAGATGGGTTTTCTGATTTTGAAGCTGATGCTGATACCGACGATGCTGTCGATTACGACTCTTCTGAAACTGAGCCAAACAGCAATACTAGTGAGGACG AACTTGACATTTCTAAATTGGGTTTGCCTCAACGCCTTGTCCAAACCCTCCAGAATCGAGGAATCACTCACCTTTTCCCCATTCAAAGAGCTGTTTTAAT TCCGACTCTGGAAGGACGAGATCTCATTGCTCGTGCCAAGACTGGGACTGGCAAGACATTAGCCTTCGGCATTCCAATCATTAAACGCCTTACTGAAGAT GCTGAGCTAAGAGGTTCCCAAAGGCGAACTGGTAGGCTTCCTAAAGTTTTGGTCTTAGCACCAACTCGGGAGCTAGCAAAGCAAGTAGAGAAAGAAATTA AAGAGTCTGCACCTTATTTGAGCACTGTTTGTGTCTATGGAGGGGTTTCCTATGCCACACAACAAAATGCTCTTTCTCGTGGGGTTGATGTTGTGGTTGG AACTCCAGGTCGAATCATCGACCTACTGAAAGGTAACAGCCTCAAACTGGGAGAAGTTGAATATTTGGTTCTCGATGAGGCTGATCAAATGCTTTCATTT GGATTTGAGGAGGATGTGGAAGTTATTTTAGAAAGTCTACCATCAAAGCGCCAGAGCATGCTTTTCTCTGCAACTATGCCCACCTGGGTTAAAAAATTAG CAAGGAAATATTTGGACAATCCTTTGCAAATTGATTTGGTTGGGGACCGAGAAGAAAAGCTGGCAGAAGGAATCAAACTTTATGCAATATCAACCACAGC AACATCAAAGCGAACCATTCTCAGTGACCTTGTAACGGTCTATGCAAAGGGCGAGAAGACTATTATCTTTACTCGGACCAAACGAGATGCTGATGAAGTA TCCATGGCGTTAACACAGAGTATAGCTTCCGAGGCATTGCATGGAGATATATCTCAGCATCAGAGGGAGAGAACTTTGAATGGTTTTCGACAGGGAAAGT TCACTGTGCTTGTTGCCACAGACGTTGCATCTCGTGGGCTTGATATCCCAAATGTTGATTTGATTATCCACTATGAACTTCCTAATGATCCAGAAACTTT CGTGCATCGCTCTGGCCGTACTGGACGTGCAGGGAAGGAAGGTACTGCCATTTTGATGTTCACTAACAGTCAAAGGAGAACTGTCAGATCCCTAGAGCGT GATGCGGGATGCAAGTTTGAGTTTGTTAGTCCACCAGCTATTGAAGAGCTTTTGGAGTCATCAACTGAGCAAGTTGTTGCTACCCTAAATGGAGTTCATC CCGAGTCTGTAGAGTTTTTCACACCAACTGCCCAGAAATTGATTGAGGAACAAGGAACAAGTGCTCTTGCTGCTGCACTAGCACATTTGAGTGGATTTTC TCGGCCTCCTTCATCCCGGTCTCTCATTAGCCATGAACAAGGATGGACAACGTTGCAGTTGACTCGGGATCCAACCTATTCTAGAGGGTTTCTATCCGCT AGATCTGTTACTGGATTTCTTTCTGATGTTTATCCTGCAGCAGCTGATGAAATTGGAAAAATACATCTAATTGCGGATGAAAGGGTTCAAGGAGCTGTTT TTGATCTTCCAGAGGAGATTGCAAAAGAATTGTTGAATAAGCAACTACCACCTGGAAACACTATTGAAAAGATCACCAAGCTGCCTGCATTGCAAGATGA TGGTCCTCCAAGTGATTTTTATGGAAGGTTTTCTAGTAGGGATCGTCCTGCTAGAGGGGGTCCTAGGGGCCAGAGAGGTGGTTTTAGATCTTCCCGTGGT CAGGGAAGTGGTAGATATTCTGATGATGAAGGCACGAACAGGCGAGGTGGTCGAAGTAACAGTAATGAGAATACTAGGTCCTGGATGTCGAGAAGCAGTG GAGATGATTGGCTGGTCGGTGGTAGAAGATCAAGCAGGCCATCATCTCGAGATAGCAGAAGCTTTGGAGGCTCTTGTTTTAATTGTGGGCGGTCGGGGCA CAGAGCATCAGAATGCCCAAACTAG
AA sequence Show only first row Show all	>Potri.005G000100.1 pacid=42802450 polypeptide=Potri.005G000100.1.p locus=Potri.005G000100 ID=Potri.005G000100.1.v4.1 annot-version=v4.1 MASTSTVIGVSSIFHSKTTTSCRRAAAATTTTAANLSSAMPLSSSSASFLSEKPPHFNSLIAKTQLSFKHSLIINTNSTFTPPSAIATPNPILSEEAFKG LDGFSDFEADADTDDAVDYDSSETEPNSNTSEDELDISKLGLPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTLAFGIPIIKRLTED AELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYATQQNALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSF GFEEDVEVILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEV SMALTQSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSLER DAGCKFEFVSPPAIEELLESSTEQVVATLNGVHPESVEFFTPTAQKLIEEQGTSALAAALAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTYSRGFLSA RSVTGFLSDVYPAAADEIGKIHLIADERVQGAVFDLPEEIAKELLNKQLPPGNTIEKITKLPALQDDGPPSDFYGRFSSRDRPARGGPRGQRGGFRSSRG QGSGRYSDDEGTNRRGGRSNSNENTRSWMSRSSGDDWLVGGRRSSRPSSRDSRSFGGSCFNCGRSGHRASECPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	1.41	0.9892
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	2.44	0.9843	RPOD1.1
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	3.16	0.9801
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	4.00	0.9813
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	4.24	0.9828
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	4.89	0.9794	Pt-HCF106.1
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Potri.006G044700 [exp]	4.89	0.9778
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	5.29	0.9785
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	5.74	0.9771
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	6.70	0.9654	PLCYC4.2

Compare expression of checked genes

Potri.005G000100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.