Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26740 92 / 5e-24 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 89 / 1e-22 Protein of unknown function (DUF300) (.1) AT1G23070 37 / 0.0002 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G000600 [exp] 103 / 6e-28 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.018G062600 [exp] 40 / 1e-05 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001058 [exp] 88 / 2e-22 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 88 / 2e-22 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10035832 [exp] 36 / 0.0008 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [poplar] [flax] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Potri.005G000232.1 pacid=42804685 polypeptide=Potri.005G000232.1.p locus=Potri.005G000232 ID=Potri.005G000232.1.v4.1 annot-version=v4.1 ATGGTTGAATTGCTGCCAATTTACTTTAGCGTAATTGCTTTCTTCTGCACCTTGGGAGCTATGGCTTTGGCCATTTTCCACATCTATAGGCACTTTTTGA ATTATACTGAACCTACTTATCAGAGATACATTGTCCGCATCATCTTTATGGTCCCGGTTTGTGCTTCTCTTCTTTCTCACTTGCTGTTATTATATTTATA A
AA sequence Show only first row Show all	>Potri.005G000232.1 pacid=42804685 polypeptide=Potri.005G000232.1.p locus=Potri.005G000232 ID=Potri.005G000232.1.v4.1 annot-version=v4.1 MVELLPIYFSVIAFFCTLGAMALAIFHIYRHFLNYTEPTYQRYIVRIIFMVPVCASLLSHLLLLYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26740			Protein of unknown function (D...		Potri.005G000232 [exp]	0	1
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	9.79	0.8067
AT3G05940			Protein of unknown function (D...		Potri.005G000300 [exp]	12.64	0.7930
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	16.43	0.8632
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.001G448800 [exp]	18.57	0.8603
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.005G035300 [exp]	22.44	0.8350
AT5G15070			Phosphoglycerate mutase-like f...		Potri.004G129900 [exp]	23.66	0.7959
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	25.98	0.8335
AT4G01810			Sec23/Sec24 protein transport ...		Potri.014G112600 [exp]	26.55	0.7742
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	26.58	0.8401
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	27.92	0.8315

Compare expression of checked genes

Potri.005G000232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.