Plant FIBer expression Database

Potri.005G001100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G000200
[exp]
79 / 2e-18 AT5G26720 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G001100.4 pacid=42804646 polypeptide=Potri.005G001100.4.p locus=Potri.005G001100 ID=Potri.005G001100.4.v4.1 annot-version=v4.1
ATGTTTGTGTCAGATGCTAGGCTGAATATTTCTAAAGAAGATGACGATATTCAAGATCAAGCAGAAAATAGACCGCACCTCAATTCCACCAACAACCACT
GCATCAAGAAGAAGAAGAAGTATAAGTTTATGGTGACCAATAAGAACAAGAAGAAGAAGAAGAAAGATGTTTCTTTCAGAGAAAGTTACAGTACTAGTGA
TCATCGATCATCCGGTGGTGGTGGTGGTGGTGGTGGTGGAAACATTGATTTCAACAAGCCAACCAAAGTGATCTTCTTTCCATTTAATAACCCCAACAAA
TTTTTCTATAAAAAAAGCTCCCCTTTTTCTCCATCTTCTTCTTCAAGTACTGCCGCTGTTTCTGGTAATGCTTGTTTTCCAGGTAAGATTAGTAGACCTA
TTTTCTTTTGTTTTAAGCAGCCCCCTACTTTGGAATCTTCTTCAACATCAGCCACCCTCCAGTCTCAAACAAGCGACCCCAATAATCCTAACTTCACTTT
CGACCGGTTGAAATCTTTGATTGAAAACAATGATTTCTTTTCCAAACAATGCAACCCCCACTCTTTATAA
AA sequence
>Potri.005G001100.4 pacid=42804646 polypeptide=Potri.005G001100.4.p locus=Potri.005G001100 ID=Potri.005G001100.4.v4.1 annot-version=v4.1
MFVSDARLNISKEDDDIQDQAENRPHLNSTNNHCIKKKKKYKFMVTNKNKKKKKKDVSFRESYSTSDHRSSGGGGGGGGGNIDFNKPTKVIFFPFNNPNK
FFYKKSSPFSPSSSSSTAAVSGNACFPGKISRPIFFCFKQPPTLESSSTSATLQSQTSDPNNPNFTFDRLKSLIENNDFFSKQCNPHSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26720 unknown protein Potri.005G001100
[exp]
0 1
AT4G36870 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodom... Potri.007G032700
[exp]
1.00 0.8183
AT3G20720 unknown protein Potri.011G132800
[exp]
1.41 0.7933
AT4G00340 RLK4 receptor-like protein kinase 4... Potri.014G086900
[exp]
5.00 0.6559
AT4G22190 unknown protein Potri.004G003900
[exp]
6.16 0.6627
AT3G28920 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, hom... Potri.017G082900
[exp]
9.79 0.6660
Potri.012G070801
[exp]
14.49 0.6331
AT4G24015 RING/U-box superfamily protein... Potri.003G142600
[exp]
20.49 0.6769
AT1G57560 MYB ATMYB50 myb domain protein 50 (.1) Potri.010G004300
[exp]
21.35 0.6986
AT3G08670 unknown protein Potri.016G139500
[exp]
22.24 0.7067
AT5G58160 actin binding (.1) Potri.006G185501
[exp]
23.36 0.7053

Potri.005G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.