Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26710 1117 / 0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT1G25350 228 / 6e-64 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) AT5G64050 62 / 1e-09 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1) AT1G64880 43 / 0.0008 Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000400 [exp] 1407 / 0 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.008G122200 [exp] 237 / 2e-67 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122932 [exp] 111 / 1e-26 AT1G25350 500 / 1e-173 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122866 [exp] 109 / 1e-25 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.009G169700 [exp] 67 / 2e-11 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Potri.003G004700 [exp] 44 / 0.0003 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Potri.019G077000 [exp] 43 / 0.0009 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014335 [exp] 1134 / 0 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10026044 [exp] 1132 / 0 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10034339 [exp] 242 / 9e-68 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10041433 [exp] 238 / 9e-68 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10026608 [exp] 153 / 3e-43 AT5G26710 141 / 9e-40 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10022659 [exp] 68 / 2e-11 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10012512 [exp] 67 / 2e-11 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10007148 [exp] 53 / 5e-07 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002537 [exp] 52 / 1e-06 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002536 [exp] 51 / 3e-06 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00749 [poplar] [flax] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain CL0039 [poplar] [flax] PF03950 [poplar] [flax] tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain CL0497 [poplar] [flax] GST_C PF14497 [poplar] [flax] GST_C_3 Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G001200.1 pacid=42802382 polypeptide=Potri.005G001200.1.p locus=Potri.005G001200 ID=Potri.005G001200.1.v4.1 annot-version=v4.1 ATGGAGATAAAAGACTTTTGTTTTGGAGCCGATAGCACTCCTCCATTGTCTGTCATCGCAGCCGCCAAGGTTGCGTCTCTCACTCTTCCTCCTCCCTCCA CTGTTACAAATGCTTCTGCTTCTGCTTCTCTTCCTACTTTCCTCTTCTCTAATGGGCTGAAATTGCAAGGAACCTATGTGCTTCTCCGATACATTGGCCG CGTTGCCAATCTATATGGTCAGGACCCATTTGAATCTAGCCAGATTGATCAGTGGCTCGAATACACCCCTGTCTTGTCTGTAGGCTCTGAATTCGAGAAT GCCTGCAACTATATTGACAATTATCTGCAAACTCGTACTTTTCTCGTGGGCTACTGTTTGTCTATTGCAGACATTGCGATCTGGTCCGGTCTTGCAGGAA CTGGGCTGAGATGGGAGAGTTGTAGGAAGTCTAAGAAGTTCCCGAACATAGTACGCTGGTTCAATTCAATATTTGATGAGTATAGCGAAGCTTTGAATGA AGTCATGTCAACATATGTTGGCAAAAAGGGCTCAGTAAAGCCTGCAGCAGCTAAACCAAAAGGGCAACAGGTTGTCGGTGGGGATAACCCAGAAAAGGGA AAAGCAAGCAGCAAACCTTCATCTGAAGTAGATCTTCCAGAAGCTGAAATTGGAAAGGTGTGTCTGCGATTTGCTCCTGAACCTAGTGGCTATCTTCACA TTGGGCACTCAAAAGCAGCTCTACTCAACCAGTATTTTGCTCAAAGGTACCAAGGTCGAATGATAGTTCGCTTCGATGATACAAATCCATCAAAGGAAAG CAATGAATTTGTTGACAATCTTTTAAAAGATATCGAGACATTGGGTATCAAATATGAAACCATCACACATACATCTGATTACTTTCCCCAGCTGATGGAA ATGGCTGAAAATTTGATCCGCCAGGGTAAAGCTTATGTTGACGATACACCACGCGAGCAAATGCAGAAAGAAAGAATGGATGGCATTGAATCAAAATGTA GGAGCAACAGTGTAGTGGAGAATCTGAAACTGTGGAAGGAAATGATTGCAGGATCAGAGAGAGGATTACAGTGCTGTGTCCGAGGGAAGTTAGACATGCA AGACCCAAACAAGTCTCTTCGAGATCCAGTCTACTATCGTTGCAATCCTGTTCCTCACCATCGGATTGGGTCCAAATACAAGATATACCCAACATATGAT TTTGCATGTCCATTTGTTGATTCTGTAGAAGGTATAACTCATGCACTCCGATCGAGTGAGTATCATGATCGAAATGCTCAATATGATAGGATTCAAGCAG ATATGGGACTGCGAAAGGTTCACCTTTATGAATTTAGCCGGTTGAATATGGTCTACACAATTCTCAGCAAGCGTCATCTTCGTTGGTTCGTTGAAAATGG AAAGGTGGATGGATGGGATGATGCTCGATTTCCAACTGTACAGGGAATTGTTCGCAGAGGTTTGAAAGTAGAGGCATTGGTGCAATTCATCCTTGAACAG GGGGCATCCAAAAATCTTAATCTCATGGAATGGGACAAACTCTGGACAATTAATAAGAAGATTATCGATCCTGTGTGTCCCAGGCATACTGCTGTCATTG AAGAACATAGGGTGCCATTAACCTTGACTGATGGTCCCAAGCAACCATTTGTTCGAATCATTCCAAGGCACAAGAAACATGAGGGTGCTGGAGAGAAGGC CACAACATACACAAATAGGATATGGATAGACCATGCAGATGCAGAGTTGATCTCTGTAAATGAAGAAATAACCTTAATGGATTGGGGAAATGCCATAGTG AAGGAAATTGAGAAGGACCAGAATGGAAACGTCACACGCTTGAGTGGGGTCTTGCATCTCGAAGGATCTGTCAAGACCACAAAGTTGAAGCTCACCTGGC TACCAGATACAAGTGAATTAGTTAACCTCACTCTTGTGGACTTTGACTATCTAATCACAAAGAAAAAGCTGGAGGAGGGAGAAAGTTTCCAAGATGTGCT TAACCCATTTACCAAGAAGGAGACTGCAGCTCATGGGGATTCAAACATGCGAAATTTGAAGCGTGGAGAGATATTGCAGTTGGAGAGGAAGGGCTACTTT AGATGTGATGTTCCTTTTGTCAGACCTTCGAAGCCCATAGTTCTGTTTGCAATTCCAGATGGCCGACAAGCAACCTCATTGAAGTAG
AA sequence Show only first row Show all	>Potri.005G001200.1 pacid=42802382 polypeptide=Potri.005G001200.1.p locus=Potri.005G001200 ID=Potri.005G001200.1.v4.1 annot-version=v4.1 MEIKDFCFGADSTPPLSVIAAAKVASLTLPPPSTVTNASASASLPTFLFSNGLKLQGTYVLLRYIGRVANLYGQDPFESSQIDQWLEYTPVLSVGSEFEN ACNYIDNYLQTRTFLVGYCLSIADIAIWSGLAGTGLRWESCRKSKKFPNIVRWFNSIFDEYSEALNEVMSTYVGKKGSVKPAAAKPKGQQVVGGDNPEKG KASSKPSSEVDLPEAEIGKVCLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGRMIVRFDDTNPSKESNEFVDNLLKDIETLGIKYETITHTSDYFPQLME MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRSNSVVENLKLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPVPHHRIGSKYKIYPTYD FACPFVDSVEGITHALRSSEYHDRNAQYDRIQADMGLRKVHLYEFSRLNMVYTILSKRHLRWFVENGKVDGWDDARFPTVQGIVRRGLKVEALVQFILEQ GASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEEHRVPLTLTDGPKQPFVRIIPRHKKHEGAGEKATTYTNRIWIDHADAELISVNEEITLMDWGNAIV KEIEKDQNGNVTRLSGVLHLEGSVKTTKLKLTWLPDTSELVNLTLVDFDYLITKKKLEEGESFQDVLNPFTKKETAAHGDSNMRNLKRGEILQLERKGYF RCDVPFVRPSKPIVLFAIPDGRQATSLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.005G001200 [exp]	0	1
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	5.29	0.6801	MAP1.3
AT1G15420			unknown protein		Potri.001G173300 [exp]	9.53	0.7478
AT1G60640			unknown protein		Potri.017G121000 [exp]	9.74	0.7021
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	14.07	0.7443
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	16.97	0.6821
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	23.06	0.7301
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	37.10	0.6660
AT2G26200			S-adenosyl-L-methionine-depend...		Potri.006G225600 [exp]	43.31	0.6229
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	43.37	0.6589
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	52.00	0.6466

Compare expression of checked genes

Potri.005G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.