Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GER1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62020 309 / 6e-108 GLP10 germin-like protein 10 (.1.2) AT1G09560 303 / 1e-105 GLP5 germin-like protein 5 (.1) AT1G02335 300 / 2e-104 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G26700 261 / 5e-89 RmlC-like cupins superfamily protein (.1) AT3G05930 248 / 8e-84 GLP8 germin-like protein 8 (.1) AT1G18970 221 / 3e-73 GLP4 germin-like protein 4 (.1) AT1G18980 219 / 3e-72 RmlC-like cupins superfamily protein (.1) AT4G14630 198 / 5e-64 GLP9 germin-like protein 9 (.1) AT3G05950 192 / 1e-61 RmlC-like cupins superfamily protein (.1) AT5G39110 191 / 2e-61 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000500 [exp] 380 / 5e-136 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.014G110400 [exp] 322 / 8e-113 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 320 / 2e-112 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.015G068200 [exp] 241 / 5e-81 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 211 / 2e-69 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 210 / 8e-69 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 208 / 3e-68 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 206 / 3e-67 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 202 / 8e-66 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038014 [exp] 319 / 7e-112 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2) Lus10009254 [exp] 294 / 1e-101 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2) Lus10032016 [exp] 213 / 4e-70 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10036658 [exp] 211 / 5e-69 AT1G18980 229 / 3e-76 RmlC-like cupins superfamily protein (.1) Lus10032015 [exp] 210 / 9e-69 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 209 / 1e-68 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10015128 [exp] 209 / 2e-68 AT3G05950 238 / 7e-80 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 209 / 3e-68 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10030048 [exp] 207 / 8e-68 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035186 [exp] 207 / 1e-67 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.005G001300.1 pacid=42803027 polypeptide=Potri.005G001300.1.p locus=Potri.005G001300 ID=Potri.005G001300.1.v4.1 annot-version=v4.1 ATGGCAGCTAATAAGGTGGCCTACCTCTCCCTTCTTTATATGACTCTTGGTTTGGTACTAGTGGCCACCGTTTCTGCTGATCCTGACCTGCTTCAAGATG TTTGCGTTGCTGATCTTTCTTCTGGTGTGAAGGTGAATGGATTCACCTGCAAGGAAAACATATCGGCAGAGGACTTCTTCTTTGCCGGTTTGGCTAAACC AGGTCTCACCAACAATACATTCGGCTCCTTGGTCACTGCTGCCAATGTTCAAAAGATCCCAGGACTCAACACCTTGGGGGTATCCATGTCCCGCATTGAC TACGCCCCTGGTGGCTTAAATCCACCCCACACACATCCACGTGCCACTGAGATGGTCTTTGTCCTTGAAGGCCAACTGGACGTGGGGTTCATTACCACTG CCAACGTTTTGATATCAAAGACCATCAAGGTGGGCGAGACATTTGTTTTCCCCAAAGGCTTGGTTCATTTCCAGAAGAACAACGGTCAAGTCTCAGCTGC AGTGATTGCTGCATTCAATAGCCAGTTGCCAGGAACTCAGTCAATTGCAGCCACATTGTTTGCAGCCCAACCACCCGTGCCTGACCATGTCTTGACCAAG GCTTTCCAGGTTGGTACCAAGGAGGTCCGAAAGATCAAGTCCAGGTTTGCACCTAAGAACTAG
AA sequence Show only first row Show all	>Potri.005G001300.1 pacid=42803027 polypeptide=Potri.005G001300.1.p locus=Potri.005G001300 ID=Potri.005G001300.1.v4.1 annot-version=v4.1 MAANKVAYLSLLYMTLGLVLVATVSADPDLLQDVCVADLSSGVKVNGFTCKENISAEDFFFAGLAKPGLTNNTFGSLVTAANVQKIPGLNTLGVSMSRID YAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTANVLISKTIKVGETFVFPKGLVHFQKNNGQVSAAVIAAFNSQLPGTQSIAATLFAAQPPVPDHVLTK AFQVGTKEVRKIKSRFAPKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.005G001300 [exp]	0	1	Pt-GER1.1
AT4G34660			SH3 domain-containing protein ...		Potri.004G161300 [exp]	9.74	0.8429
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	10.19	0.8728
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.010G211000 [exp]	10.77	0.8045
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	11.48	0.8543	RAB1.1
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	14.14	0.8445
AT5G56520			unknown protein		Potri.001G003500 [exp]	16.52	0.7729
AT5G47530			Auxin-responsive family protei...		Potri.010G156200 [exp]	18.33	0.7757
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	19.28	0.8512	Pt-ARPC1.1
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	31.55	0.8266
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	31.62	0.8322

Compare expression of checked genes

Potri.005G001300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.