Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) AT1G33440 342 / 9e-110 Major facilitator superfamily protein (.1) AT1G27040 326 / 5e-104 Major facilitator superfamily protein (.1.2) AT1G69850 322 / 2e-102 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT5G01180 314 / 2e-99 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT5G13400 310 / 2e-97 Major facilitator superfamily protein (.1) AT3G54140 308 / 3e-97 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT3G25280 303 / 1e-95 Major facilitator superfamily protein (.1) AT5G62730 296 / 3e-92 Major facilitator superfamily protein (.1) AT1G68570 288 / 5e-89 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G272900 [exp] 618 / 0 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 471 / 4e-160 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 462 / 7e-157 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 427 / 1e-142 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 384 / 5e-126 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G229000 [exp] 379 / 6e-124 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 350 / 7e-113 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 327 / 4e-104 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.005G233500 [exp] 328 / 6e-104 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032876 [exp] 477 / 2e-162 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 471 / 8e-160 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 426 / 3e-143 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10015240 [exp] 424 / 2e-141 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 417 / 3e-139 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10007437 [exp] 357 / 4e-115 AT1G59740 842 / 0.0 Major facilitator superfamily protein (.1) Lus10024457 [exp] 356 / 7e-115 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10033101 [exp] 331 / 1e-105 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10036710 [exp] 324 / 6e-103 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 322 / 2e-102 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.005G001400.1 pacid=42802931 polypeptide=Potri.005G001400.1.p locus=Potri.005G001400 ID=Potri.005G001400.1.v4.1 annot-version=v4.1 ATGGGAGATGTGGAGGGTAGCAAGGAAGATCACGTGCCCCTCGGCCTTGCAGGGAAGAAAGGGAGAGGTGGATTTAGGGCTACCATGTTTGTGTATGGCT TGGTGGCATTGGACAGCATGGGTTTCGTAGCAAACATGGTTAGCTTGGTTCTTTACTTCATGGGAGTGATGCACTTTGACATACCAACCTCAGCCAACAC TCTAACAAATTTAATGGGCTCAACATTCTTGCTCACCGTTCTTGGTGGCTTCATCTCGGATGCCTACTTGAACAGACTTCATACTGTTCTACTTTTCGGC TTTCTTGAGATTATGGCTTTGGTGTTGATAACAATTCAAGCTCATGCAAAAAACATGCACCCTCCAGCATGTGGCAAGGCAAGTTGTGTGGAGGGTGGTA TAGAATATATGTTGTACTTCTCGCTGGGTTTGCTAGCATTGGGTTCTGGTGGAGTTAGAGGAGCTCTACCAGCTCTTGGTGCTGACCAATTCAATGAGAA GGACCCAGAAGAAGCCAGGGCACTTGCAAGTTACTTCAATTGGATGACACTTAGCACGGTGGTTGGAGCTGTTGTTGGGGTCACGGGCATTGTTAATCTT AGTATGTTTCATGGTTGGTGGAAGGGGTTTCTGGTATCAACTGTGGGGACCTTCATTGGTTTTGTTATTCTCGCCGCCGGGAAGCCTTTCTACCACCTCC GACAACCAGGAGACAGCCCCCTTATCAGGATTGCACAGGTTTTTGCTTTGGCCATTAGAAACCGACGATTGCCATTGCCAAAGGTTGAGGAATTGTATGA GATCAGTGACAAAGAAACCATCGCTTATGAGGAAAAACTTGAGCACACTGAACAATTCAGATTCCTAGATAAGGCTGCAATTCTTCCTGAAGGCACGCAA CCAGCGCCATGGAAAGTTTGCTCTGTGACACAAGTCGAAGAAGTGAAGATCCTAACAAGAATGTTACCTATATTAGGCAGCACCATCATAATGAACACAT GTTTAGCACAGCTCCAAACCTTCTCAGTACAACAAGGAAACGATATGTATCGCAAAATTGGCAAACATGATTTTCCTGCCCCATCAGTTCCAGTAATTCC ACTCGTATTTATGGTCATACTCATACCTGCCTATGAGTTCTTCTTCGTTCCTTTTGCTCGGAAGTTCACTGGCCATCCGGCAGGCATCACGCAACTTCAG CGTGTGGGAGTTGGTCTAGTTCTCTCTGCCGTTTCAATGGCCGTAGCTGGTCTAGTTGAAGTAAAAAGAAGGGACCAGGCACTTAAAGGTCATCTCATAA GTCTTTTCTGGCTTTCCTTCCAATATGGAATATTCGGAATAGCAGACATGTTCACCCTCGTAGGACTATTGGATTTTTTCTACAAGGAGGCACCTTCAAG CATGAAATCACTGTCTACTTCATTCACTTGGCTTTCGTTGTCTTTCGGCTACTTCTTGAGTACTGTTTTTGTGAATCTGATAAATGCCGTCACCAAAAGA ATTACACCAAGCAGACAAGGATGGTTACATGGGCAATTGTTGGACTACAACAATTTGAATCTGTTCTACTGGTTCTTAGCCATCCTCAGCTGTCTCAACT TTGTACTCTATCTCTACTCGGCCTCATGGTACAAATATAAACCGGATGACACAGAGTCTAATAACAAGCCAAAAGCGAAGGATTCGGATGAGGGATTGCT TCTTGCCAAGGAAAGTAGTGGGGCTAAGACAGATGAAGAGGAAAGTGAGCAGAATGCAGCAAATAGGAATGAAGAAGAAAGCGCACAGGAGACGGATGAT GCTGAAGCAAAAGCTCCCTCTTCTGAGCAATCCAATGGAACAAAATAA
AA sequence Show only first row Show all	>Potri.005G001400.1 pacid=42802931 polypeptide=Potri.005G001400.1.p locus=Potri.005G001400 ID=Potri.005G001400.1.v4.1 annot-version=v4.1 MGDVEGSKEDHVPLGLAGKKGRGGFRATMFVYGLVALDSMGFVANMVSLVLYFMGVMHFDIPTSANTLTNLMGSTFLLTVLGGFISDAYLNRLHTVLLFG FLEIMALVLITIQAHAKNMHPPACGKASCVEGGIEYMLYFSLGLLALGSGGVRGALPALGADQFNEKDPEEARALASYFNWMTLSTVVGAVVGVTGIVNL SMFHGWWKGFLVSTVGTFIGFVILAAGKPFYHLRQPGDSPLIRIAQVFALAIRNRRLPLPKVEELYEISDKETIAYEEKLEHTEQFRFLDKAAILPEGTQ PAPWKVCSVTQVEEVKILTRMLPILGSTIIMNTCLAQLQTFSVQQGNDMYRKIGKHDFPAPSVPVIPLVFMVILIPAYEFFFVPFARKFTGHPAGITQLQ RVGVGLVLSAVSMAVAGLVEVKRRDQALKGHLISLFWLSFQYGIFGIADMFTLVGLLDFFYKEAPSSMKSLSTSFTWLSLSFGYFLSTVFVNLINAVTKR ITPSRQGWLHGQLLDYNNLNLFYWFLAILSCLNFVLYLYSASWYKYKPDDTESNNKPKAKDSDEGLLLAKESSGAKTDEEESEQNAANRNEEESAQETDD AEAKAPSSEQSNGTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59740			Major facilitator superfamily ...		Potri.005G001400 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G026600 [exp]	3.16	0.9986
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075900 [exp]	3.16	0.9992
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.011G006200 [exp]	3.46	0.9990
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131300 [exp]	3.87	0.9990
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076100 [exp]	4.89	0.9989
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	5.00	0.9990	CYP728F1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076000 [exp]	6.00	0.9987
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191500 [exp]	6.32	0.9988
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.005G088600 [exp]	8.83	0.9984
AT3G54040			PAR1 protein (.1)		Potri.009G039900 [exp]	9.48	0.9981

Compare expression of checked genes

Potri.005G001400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.