Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05910 602 / 0 Pectinacetylesterase family protein (.1.2) AT5G26670 590 / 0 Pectinacetylesterase family protein (.1.2) AT1G57590 585 / 0 Pectinacetylesterase family protein (.1) AT3G62060 562 / 0 Pectinacetylesterase family protein (.1) AT2G46930 561 / 0 Pectinacetylesterase family protein (.1) AT1G09550 456 / 7e-160 Pectinacetylesterase family protein (.1) AT4G19420 434 / 2e-151 Pectinacetylesterase family protein (.1.2) AT5G23870 416 / 9e-144 Pectinacetylesterase family protein (.1.2.3) AT3G09410 401 / 8e-138 Pectinacetylesterase family protein (.1.3) AT4G19410 387 / 4e-133 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000900 [exp] 766 / 0 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 572 / 0 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 551 / 0 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 433 / 3e-150 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 428 / 2e-148 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.015G145400 [exp] 404 / 1e-139 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 402 / 1e-138 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G233900 [exp] 402 / 1e-138 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 399 / 3e-137 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038024 [exp] 577 / 0 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 572 / 0 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 548 / 0 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10010084 [exp] 450 / 1e-157 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 425 / 2e-147 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 424 / 7e-147 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 405 / 1e-139 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 403 / 5e-139 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 400 / 5e-138 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10024398 [exp] 395 / 2e-135 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.005G001500.1 pacid=42804682 polypeptide=Potri.005G001500.1.p locus=Potri.005G001500 ID=Potri.005G001500.1.v4.1 annot-version=v4.1 ATGAAGTTTTTCAGCTTCTGGGCTGCGGCTGTTGCTGTTTGTCTTTTTGGGGTATGGGTGGTGGATGGGTTCTTGGAGATGAATGAAGAAGAGATATTTT ACACTGAAGCTAATGCTTCTTATTACATTGAATCTAAAGCTTATAATCCCAATAATGCTTTGTTGGTTGGCCTTACTCTTATCAAATCAGCTGCTGCTAA AGGAGCAGTCTGTTTGGATGGAACATTGCCTGGATACCATTGGCATCGCGGGTATGGTTCAGGAGCAAATAGTTGGCTTATTCAATTGGAGGGAGGAGGA TGGTGTAATTCTGTTAGAGCTTGTGTTTACCGAAAAACAACTCGGCGAGGCTCATCTAACTATATGGAAAAGCAGTTGGCATTCACTGGAATACTGAGCA ATAAAGCTGTAGAAAATCCTGATTTTTTCAACTGGAACAGAGTAAAACTTCGATACTGTGATGGTGCCTCTTTTACGGGGGACAGTGAACACAAGGCTGC ACAACTTCAATTTAGAGGACAACGTATATGGTCAGCTGCAATGGAAGATTTAATGTCTAAGGGGATGCGCTATGCCAATCAGGCTCTTCTTTCTGGCTGC TCTGCTGGGGGTCTAGCTTCCATTTTACACTGTGATGAGTTTAGGAACTTCTTTCCGAGAAAAACTAGAGTGAAATGCCTGAGTGATGCTGGTTTATTCC TTGATGCAGTTGATGTTTCTGGTGGGCGAACGTTAAGAAACTTATATGGTGGTGTTGTGGGCTTGCAGGGGGTGCAGAATAACCTTCCACGCATATGCAT CAACCACCTTGATCCAACTTCGTGCTTCTTCCCTCAAAACGTAATTGGCAATGTTAAAACCCCACTGTTCATTCTCAACGCAGCTTATGATTCATGGCAG ATCCAGTCCAGCTTAGCCCCACCATCTGCAGATCCTGCTGGCTATTGGAGTAATTGCAGAAAGGACCACTCAAAATGTTCTGCATCCCAAATCCAGTTTT TGCAAGGATTCAGAAATCAAATGTTGAATGCGATAAAAGGCTTTTCAAGGTCTAGACAGAATGGCTTGTTTATAAATTCATGTTTTGCTCATTGCCAATC AGAGAGGCAAGATACATGGTTTGCCGATAATTCCCCCGTACTTGGGAACAAGCCAATTGCACTTGCTGTTGGAGATTGGTATTTCGACCGGTCGGGCGAG AAGGCTATTGACTGCCCCTACCCCTGTGACAGCAGTTGCCACAATCTGGTTTTCAGATGA
AA sequence Show only first row Show all	>Potri.005G001500.1 pacid=42804682 polypeptide=Potri.005G001500.1.p locus=Potri.005G001500 ID=Potri.005G001500.1.v4.1 annot-version=v4.1 MKFFSFWAAAVAVCLFGVWVVDGFLEMNEEEIFYTEANASYYIESKAYNPNNALLVGLTLIKSAAAKGAVCLDGTLPGYHWHRGYGSGANSWLIQLEGGG WCNSVRACVYRKTTRRGSSNYMEKQLAFTGILSNKAVENPDFFNWNRVKLRYCDGASFTGDSEHKAAQLQFRGQRIWSAAMEDLMSKGMRYANQALLSGC SAGGLASILHCDEFRNFFPRKTRVKCLSDAGLFLDAVDVSGGRTLRNLYGGVVGLQGVQNNLPRICINHLDPTSCFFPQNVIGNVKTPLFILNAAYDSWQ IQSSLAPPSADPAGYWSNCRKDHSKCSASQIQFLQGFRNQMLNAIKGFSRSRQNGLFINSCFAHCQSERQDTWFADNSPVLGNKPIALAVGDWYFDRSGE KAIDCPYPCDSSCHNLVFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05910			Pectinacetylesterase family pr...		Potri.005G001500 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.001G405500 [exp]	1.00	0.8360
AT4G24710			P-loop containing nucleoside t...		Potri.012G086400 [exp]	15.81	0.7652
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	24.12	0.8199
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	36.05	0.7819
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	42.00	0.7263
AT5G11160		APT5	adenine phosphoribosyltransfer...		Potri.006G255900 [exp]	47.47	0.7748	Pt-APT2.2
AT5G59350			unknown protein		Potri.009G029300 [exp]	48.92	0.7287
AT2G38680			5'-nucleotidases;magnesium ion...		Potri.010G243900 [exp]	56.23	0.7428
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Potri.010G104200 [exp]	57.54	0.7501
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.010G152600 [exp]	62.84	0.7370	Pt-ARF1.6

Compare expression of checked genes

Potri.005G001500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.