Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05900 62 / 2e-09 neurofilament protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G001150 [exp] 367 / 6e-114 AT3G05900 61 / 3e-09 neurofilament protein-related (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G001700.1 pacid=42804811 polypeptide=Potri.005G001700.1.p locus=Potri.005G001700 ID=Potri.005G001700.1.v4.1 annot-version=v4.1 ATGGCTACCGAGACTGCTCCATCACATCAAACTCCTTCTGATCACGAGCCAATGGAGAAAGTGACCGAAGAAGTAAAGCCTGTGGAACCTGAAATTGTTT CTGTAGCCAAGAAAACTGAAGAAGAAGAAGACCTCAAACCTAATGAACTAGCAAGTCAATCAACCCCGTTAGCTAAATCAGAAGGAGAAGCCGAAGATGA GGCAGAGCCTCCAACAGTTGAGGTTAAGATGATTGATGATGCTCCAATTGTTGATGTTCCAGTCGATGATGAAAAAGAGTTGGAAAAAGATTCCATTCCT GGCTCACATACATCCAGTGTTCTAGCTCCGGTGACCAGTGTTGTTGATGGTGAATCAGTTGCTCCAGCTATAGAGTTTGTTCCCAAAGAAGCAGAAGAGC AACCATTATCGTCATCCTTGGAGGAATTGCCACATGAAGAACCCAAGACAGTTGATGTTCCCGTATCATTAGAAGAAGCCATTGAGAAACCACATGAGCC ATCAGAAGTTCTTATTATTAAAGAGTCTGAACCAATTGTGGCAAAAAACACCGAAGATTCAGGGGTATTAAAAGAAGTCGACAAACAAGAATTAGTAATT CCAGAAGTTGAAGTGAAACTACAGGAGAAATCTGAAGTTGGTAAACAAGTTGAAAAGCCAAAAACAGAAGTGATTGAGAAACCAGAGGAGCCTTTGGAAG TTATTCCTATCAAATCAGAAGCATTACTAGTAAAAGATGCGGAAGATTCAGAACCAGTGTTCAAAGAAGATGATAAACCAGAATCAGAATTAGTAATTCC TGAAATGGAGGTGAAATTGGAGGAACAATCCGAAGTCATTAAAAAAGTTGAACCAGAAGAGAAATCAGTTGAAGTAATCGCCAAAACACAGGAGCTGGAA GTTCTTCCTACCAAAGAATCAGAAGCAGTTCTTGTAAAAGATATTGATGGCTCACAAGAATTGTCTAAAGAAGCTGATAAAGTAGAAGCAGTAGCTCCTG AACCCAGGGAAGTGAAAATGGAGTCTGAAGTCACTGAACAAGTAGAAAAAACAGGGGAGAAATCTGTTGAAGCTATTGAGAAAACACAGGATTCATCGGA AGTTCATCCTATTAAAGAATCAGAAGCAGTTGCAGTAAAAGATATCAATGATTCAGTAGCAGTGCCTGAAGTTGATAAACCAGAATCAGCAGTTCCTGAA GTTGAGGTTAAACAAGAAAAGCAATCTGAAGTAATTGAACAAGTGGAAAAACCAGAATCAGCGGTTCCTCAGGTTGAGGTGAAATTGGTGGAACAACCTG AAGTAACTGAACAAGTTGAAAAACCAGAATCATTGGGTCCTGAGGTTGAGGTGAAACCAGAAGAACAACCTGAAGTCACTACACATACGGAAAAACAAAA GAAACATGAAGTAGAGTTGAAAACTGAGGCACGATCTGAAGTTAGTGAACAGGTTGAGATTAAGCCAACTAATGAAAAGCCAGAGGAAGTAGCTGGAATT ACTCAGGAGGCTGAAGTTGATGTCAAAGAGGATATAGGAAAATCTTCTCTTCCTGAAGTTGTAGGAAAGGTTGGTCCAGAAGATGAAAAAAGAGAGGCTG AAGGAACTGATCCGGTTGAAGTGCCAGTAAAAGAGGTTGTGGTAGAAGCGGAAAAGGGTGGAGAAGAGAAAGAAGCTCAGACGACCAAAGATGAGGGCGA GAATATAGCAAGTGAAACACTAAAAGAGGAACTAGCTCATCCCATCAAAGTGGAAGATGTCAGCGATGCGGTTTCAAATGCCGAAGTTACTGAAAAATCA TTTGAGGGAGAGAAGACAGTTGAAAATGTTGTGCCTGCTGTAGAAGACAAGAAAGAGGAGATACCAGCAGGAAAGGAAACCGAAAAAGATCAGAAAATAG AGGGAAAGCTGGATGAAGCTACCACAATTGGCAGTGAAACAGTCAAAGAATCCCAAGATTCTGGGTTAGAAGCAAAAGAAGAAGAAAGTGCAAAAAACAA CAAAGAAAACTCCGAGCAGGAAAAGGTTGATGAGATAGCGAAATCTGATACACAGAATTTAGAGCCTTCCACCACCAAGGATGCTGACGACATAAAAGTA TCACAGGATCTGCCAAGAGAAGTTCCAGCCAAGCCTACTCAAAAGCATTCAAACAACATTTTAACAAAGGTAAAGCAATCACTTGTGAAGGCAAAGAAAG CTATTATCGGGAAATCACCAACTCCAAAAACTGTCTCCTCTGATACCAAGGGGGATGTTAAAGTCAATAATTAA
AA sequence Show only first row Show all	>Potri.005G001700.1 pacid=42804811 polypeptide=Potri.005G001700.1.p locus=Potri.005G001700 ID=Potri.005G001700.1.v4.1 annot-version=v4.1 MATETAPSHQTPSDHEPMEKVTEEVKPVEPEIVSVAKKTEEEEDLKPNELASQSTPLAKSEGEAEDEAEPPTVEVKMIDDAPIVDVPVDDEKELEKDSIP GSHTSSVLAPVTSVVDGESVAPAIEFVPKEAEEQPLSSSLEELPHEEPKTVDVPVSLEEAIEKPHEPSEVLIIKESEPIVAKNTEDSGVLKEVDKQELVI PEVEVKLQEKSEVGKQVEKPKTEVIEKPEEPLEVIPIKSEALLVKDAEDSEPVFKEDDKPESELVIPEMEVKLEEQSEVIKKVEPEEKSVEVIAKTQELE VLPTKESEAVLVKDIDGSQELSKEADKVEAVAPEPREVKMESEVTEQVEKTGEKSVEAIEKTQDSSEVHPIKESEAVAVKDINDSVAVPEVDKPESAVPE VEVKQEKQSEVIEQVEKPESAVPQVEVKLVEQPEVTEQVEKPESLGPEVEVKPEEQPEVTTHTEKQKKHEVELKTEARSEVSEQVEIKPTNEKPEEVAGI TQEAEVDVKEDIGKSSLPEVVGKVGPEDEKREAEGTDPVEVPVKEVVVEAEKGGEEKEAQTTKDEGENIASETLKEELAHPIKVEDVSDAVSNAEVTEKS FEGEKTVENVVPAVEDKKEEIPAGKETEKDQKIEGKLDEATTIGSETVKESQDSGLEAKEEESAKNNKENSEQEKVDEIAKSDTQNLEPSTTKDADDIKV SQDLPREVPAKPTQKHSNNILTKVKQSLVKAKKAIIGKSPTPKTVSSDTKGDVKVNN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	0	1
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Potri.006G121200 [exp]	1.41	0.6664
AT1G05150			Calcium-binding tetratricopept...		Potri.002G027900 [exp]	13.89	0.6747
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	29.88	0.5641
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.004G159300 [exp]	31.27	0.5984
AT1G05150			Calcium-binding tetratricopept...		Potri.005G234900 [exp]	32.61	0.6143
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.005G260400 [exp]	47.05	0.5651
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Potri.007G046500 [exp]	51.02	0.5548
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	52.91	0.5565
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.015G031100 [exp]	71.29	0.5653
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	72.88	0.5521

Compare expression of checked genes

Potri.005G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.