Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 221 / 1e-70 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT1G65330 165 / 2e-49 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT1G65300 164 / 4e-49 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26630 159 / 1e-47 MADS MADS-box transcription factor family protein (.1) AT3G05860 156 / 9e-47 MADS MADS-box transcription factor family protein (.1.2.3) AT5G27810 145 / 1e-43 MADS MADS-box transcription factor family protein (.1) AT5G26650 151 / 5e-43 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 146 / 1e-41 MADS AGL90 AGAMOUS-like 90 (.1) AT1G31630 143 / 4e-40 MADS AGL86 AGAMOUS-like 86 (.1) AT1G31640 139 / 6e-38 MADS AGL92 AGAMOUS-like 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G001700 [exp] 329 / 4e-114 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 305 / 1e-104 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 159 / 8e-48 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 155 / 1e-43 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 126 / 1e-35 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.001G214900 [exp] 72 / 3e-14 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 69 / 4e-13 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 69 / 6e-13 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 64 / 2e-11 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032108 [exp] 197 / 1e-61 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10014578 [exp] 192 / 5e-60 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10022316 [exp] 172 / 2e-52 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 149 / 3e-43 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022325 [exp] 148 / 8e-43 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10007711 [exp] 112 / 1e-30 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10016180 [exp] 106 / 4e-27 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10029367 [exp] 106 / 6e-27 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10007713 [exp] 100 / 3e-26 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10021399 [exp] 99 / 4e-25 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.005G002400.2 pacid=42805022 polypeptide=Potri.005G002400.2.p locus=Potri.005G002400 ID=Potri.005G002400.2.v4.1 annot-version=v4.1 ATGGTTGAATACGAGTATCTCTCCTGCCCTATATATACATGGCATAGAATGTTTGAGGCAAGATGCACCCAAACCATATTAGGCTGTAAAAATTCTAAAA TCCTTCATAGCCCAGCAGCCATGACTAGAAAGAAGGTGAAGCTTGCATTTATAGTTAATGATTCTGCAAGAAAAGCCACCTTCAAGAAAAGGAGGAAGGG CCTAATGAAGAAGGTGAGTGAGCTAAGCACCCTTTGTGGGATTGATGCTTGTGCTATCATTTATAGTCCCTATGATTCTCAACCTGAGGTTTGGCCCTCT CCTTTAGGAGTCCAAAGAGTGTTGTCTAAGTTCAAAACCATGCCAGAAATGGAGCAAAGTAAGAAAATGGTGAATCAAGAGAGTTTCCTTAGGCAAAGGA TCACCAAAGCCAGTGAACAACTCAGGAAACAGCGGAAGGAAAACCGTGAGAAGGAGGTCACTCAAGCCATGTTTCAATGCTTGACTGGAAAAATTAACTT GGCTAACTTAAACATGATTGACTTGAATGACCTTGGATGGATGATCGACCGTAACCTGAAGGACGTTGAAAAGAGGGTTGAAACCCTAAACAAAAGGAGT AGGAGTAGTACTGGGGGTACTAGTCATACTTCCCAATTGGCAGCAGTTGCAGCCACTGGGGCAGGACCTAGCAATGGTGGACAGCAAGCACCAGAGTCAT CACAGAAAGCAGACGTGTTGGCTACTACTAATCTTGGGGTTAATGTGGATTCCATGCTGAGACAACAATGGTTCATGGACATGGTGACCCCTCAAGAGAC TGCAATATTGGGGTTTGGCGGGGATGACAATATGATGCTGCCTTTTGGGGATACCAACCATAATGCTCTCTTCTCTAATCCCTTTTTCCCCTTGAATTGA
AA sequence Show only first row Show all	>Potri.005G002400.2 pacid=42805022 polypeptide=Potri.005G002400.2.p locus=Potri.005G002400 ID=Potri.005G002400.2.v4.1 annot-version=v4.1 MVEYEYLSCPIYTWHRMFEARCTQTILGCKNSKILHSPAAMTRKKVKLAFIVNDSARKATFKKRRKGLMKKVSELSTLCGIDACAIIYSPYDSQPEVWPS PLGVQRVLSKFKTMPEMEQSKKMVNQESFLRQRITKASEQLRKQRKENREKEVTQAMFQCLTGKINLANLNMIDLNDLGWMIDRNLKDVEKRVETLNKRS RSSTGGTSHTSQLAAVAATGAGPSNGGQQAPESSQKADVLATTNLGVNVDSMLRQQWFMDMVTPQETAILGFGGDDNMMLPFGDTNHNALFSNPFFPLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.005G002400 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	5.91	0.9193
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	8.36	0.9138
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136300 [exp]	10.53	0.9093
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Potri.004G126901 [exp]	12.00	0.9083
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	14.28	0.9056
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G149000 [exp]	15.96	0.9056	Pt-AOS.4,CYP74C7-1
AT5G23850			Arabidopsis thaliana protein o...		Potri.002G157900 [exp]	16.97	0.8967
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	24.49	0.9024
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.001G015100 [exp]	25.37	0.8814	Pt-L1.1
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	27.27	0.8848

Compare expression of checked genes

Potri.005G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.