Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 604 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 587 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 533 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 159 / 1e-44 Eukaryotic aspartyl protease family protein (.1) AT1G69100 149 / 6e-41 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G002200 [exp] 777 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.001G356900 [exp] 620 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 591 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 590 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 525 / 0 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.002G228300 [exp] 485 / 4e-169 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.014G020200 [exp] 44 / 0.0002 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 43 / 0.0003 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 601 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 600 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 576 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 563 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 560 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 554 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 499 / 3e-175 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 444 / 6e-154 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10024792 [exp] 45 / 7e-05 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018709 [exp] 45 / 9e-05 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease CL0129 [poplar] [flax] PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 CL0129 [poplar] [flax] PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.005G002800.1 pacid=42803201 polypeptide=Potri.005G002800.1.p locus=Potri.005G002800 ID=Potri.005G002800.1.v4.1 annot-version=v4.1 ATGCTCAATACTTGGGAGAAATTGGTATTGGCTCGCCCCCACAAAACTTCAGTCATATTTGACACTGGAAGCTCCAATCTCTGGGTTCCATCATCAAAAT GCTACTTTTCTATTGCCTGCTATTTCCATTCCAAGTACAAGTCAAGCTTGTCGAGTACATATATCAAGAATGGGAACTCTTGTGAAATACATTATGGATC AGGATCAATTTCTGGTTTCTTAAGTCAAGACAATGTTCAAGTTGGGGGCCTTGTTGTCAAAGATCAAGTTTTTATTGAGGTTACAAAAGAAGGAAGTCTT TCATTCGTATTGGGGAAGTTTGATGGAATACTTGGGCTTGGGTTTCAGGAAATTTCAGTTGGGAATGTTGTCCCTGTGTGGTACAATATGGTGCAACAAG ATCTTGTAGATGATGAGGTGTTCTCGTTCTGGCTCAACCGAAATCCTGAGGCGAAAGAGGGTGGCGAGCTTGTTTTTGGAGGGGTCGATCCGAAACACTT CAAGGGAAAGCATACCTATGTTCCAGTTACCAAAAAAGGGTACTGGCAGATCAACATGGGGGATTTTCTAATTGGCAACCATTCAACAGGTCTTTGCGAG GAGGGCTGCGCTGCAATTGTGGACTCCGGAACCTCATTGCTTGCTGGTCCAACACCCATCATTACCGAAATCAATCATGCCATTGGAGCAGAAGGGGTTG TGAGCGCTGAGTGTAAGGAAGTGGTTTCTCAGTATGGAGACTTAATATGGGAACTCTTAATATCAGGGGTAAAACCCAACAAAGTATGTGCGCAACTTGG TTTATGCATTTTCAATGGGGATGAGTATGTGAGCACTGGTATTGAATCAGTGGTTGAGAAGGAAAACAAGGAGGGATCATCTGCTGGTGATGATCTTCTA TGCATTGCTTGTGAGATGCTTGTTATTTGGGTCCAGAATCAACTAAGAGAAAAGGAAACAAAGGAAGCAGCAATCAACTATTTAGATAAGCTATGTGAAA GCCTGCCTAGTCCAATGGGAGAGTCAGTGATTGATTGCAATAGCATTTCAACCATGCCAAACATCTCATTTACCATCGGAGATAAACCTTTTAGCCTCAC TCCAGAGCAGTATGTTCTGAAAACCGGAGAAGGCATTGCTCAAGTTTGCATCAGTGGGTTCATGGCTTTGGATGTGCCGCCTCCACGCGGTCCTCTGTGG ATTCTTGGTGATGTATTCATGGGCGTGTATCATACCGTCTTCGACTATGGTAACCTTGAAGTGGGTTTTGCAGAGGCTGCTTAA
AA sequence Show only first row Show all	>Potri.005G002800.1 pacid=42803201 polypeptide=Potri.005G002800.1.p locus=Potri.005G002800 ID=Potri.005G002800.1.v4.1 annot-version=v4.1 MLNTWEKLVLARPHKTSVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSLSSTYIKNGNSCEIHYGSGSISGFLSQDNVQVGGLVVKDQVFIEVTKEGSL SFVLGKFDGILGLGFQEISVGNVVPVWYNMVQQDLVDDEVFSFWLNRNPEAKEGGELVFGGVDPKHFKGKHTYVPVTKKGYWQINMGDFLIGNHSTGLCE EGCAAIVDSGTSLLAGPTPIITEINHAIGAEGVVSAECKEVVSQYGDLIWELLISGVKPNKVCAQLGLCIFNGDEYVSTGIESVVEKENKEGSSAGDDLL CIACEMLVIWVQNQLREKETKEAAINYLDKLCESLPSPMGESVIDCNSISTMPNISFTIGDKPFSLTPEQYVLKTGEGIAQVCISGFMALDVPPPRGPLW ILGDVFMGVYHTVFDYGNLEVGFAEAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.005G002800 [exp]	0	1
AT4G19160			unknown protein		Potri.003G033300 [exp]	13.96	0.8486
AT2G47020			Peptide chain release factor 1...		Potri.002G188200 [exp]	19.97	0.8903
AT5G01750			Protein of unknown function (D...		Potri.016G131100 [exp]	22.75	0.8986
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	30.85	0.8101
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	35.55	0.8739
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	43.63	0.8732
AT1G58400			Disease resistance protein (CC...		Potri.010G044601 [exp]	43.70	0.8785
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	52.11	0.8363
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	52.72	0.8274
AT5G36930			Disease resistance protein (TI...		Potri.011G014301 [exp]	71.33	0.8648

Compare expression of checked genes

Potri.005G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.