Plant FIBer expression Database

Potri.005G003000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26600 650 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
AT3G62130 590 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
AT1G08490 59 / 4e-09 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
AT5G65720 43 / 0.0005 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G002400
[exp]
844 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Potri.002G187200
[exp]
619 / 0 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.014G112700
[exp]
609 / 0 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.009G066000
[exp]
64 / 1e-10 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001514
[exp]
630 / 0 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Lus10031445
[exp]
615 / 0 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Lus10009974
[exp]
595 / 0 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10038033
[exp]
593 / 0 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10031670
[exp]
69 / 2e-12 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.005G003000.1 pacid=42803671 polypeptide=Potri.005G003000.1.p locus=Potri.005G003000 ID=Potri.005G003000.1.v4.1 annot-version=v4.1
ATGGTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGAAGCACTGCAAGAAAAACGACTCCTTCAATGGCTGCTCCAACCCCACCAAGAAACCAAGACTTT
CTTTCATTTCTGACTCTGAAATCCAATCAGAGTTCTCCCACCATGACCAAACCATCTCTCGGATTAACAACGGCAGCTTTGGGAGCTGTCCTCAATCTGT
CATCTCTGCCCAGCAAAGCTTCCAGCTCCAGTTCCTCCGCCAGCCTGATCACTTCTACTTCAACACCCTCAAATCTTCTATCCTTCATTCACGTTCCATC
ATCAAATCTTTGGTAAACGCTCGTTCTGTTGATGAAATCTCCCTTGTGGACAATGCCACCACTGCTGTTGCCATTGTTTTACAGAACTATGCATGGGGTT
TTACTGAAGGGAGATTTAACAAAGGAGATGTTGCTGTCATGTTGCATTATGCTTATGGTGCTGTAAAAAAGTCTGTTCAGGCTTATGTGACGCGTGCTGG
AGGGGAAGTTATTGAGGTACAGTTACCTTTCCCTATTACATCAAAGGAAGAGATCGTGAGTGAATTTAGAAAGGCTTTAGAGAGAGGTAAAGAAAATGGG
AAGAAGAAAGTTAGGTTGGCTGTGATTGATCATGTTACTTCAATGCCAAGTGTTGTTATTCCTGTTAAAGAATTAGTTAAGATTTGTAGAGAGGAAGGTG
TTGATCAGGTTTTTGTTGATGCTGCTCATGGAATTGGGTGTGTTGATGTTGATGTGAGAGATATTGGGGCTGATTTTTATACTAGTAATTTGCATAAGTG
GTTTTTTTGCCCTCCTTCTATTGCCTTTTTGTATTGCAGGAAGAGAGGAGAGGAGGGCAATGGGGGTGATCTGCATCACCCTGTCGTGTCTCATGAGTAT
GGTAATGGATTGGCTGTAGAGAGTGCTTGGATTGGGACTAGGGATTATAGTGCTCAATTGGTTGTTCCAGCGGTTTTGGAGTTTATTAATAGGTTTGAAG
GTGGGATTGACGGAATTAAGGAGAGGAATCATGAAAAAGTTGTGGAGATGGGGGAGATGTTGGTGAAAGCTTGGGGGACTAATCTTGGGTCTCCACCGGA
GATGTGTGGGAGTATGATTATGGTTGGATTGCCTGCTTGTTTGGGGATTTCGAGCGAGTCGGATTCTTTGAAGTTAAGGACACATTTGAGAGAGCATTTC
CAGGTTGAAGTTCCTATTTATTTTAGAGCTCCGCTTGATGGAGAAGTTGGTTCAGTTACTGGCTATGCTCGGATTTCTCATCAAGTTTACAACAAGGTTG
AGGATTATTACAGGTTTAGGGATGCAGTTAACCAACTGATCAGTGATGGCTTCACTTGTGCATCTCTCTCTGATTGA
AA sequence
>Potri.005G003000.1 pacid=42803671 polypeptide=Potri.005G003000.1.p locus=Potri.005G003000 ID=Potri.005G003000.1.v4.1 annot-version=v4.1
MVSSSSSSSSSSKHCKKNDSFNGCSNPTKKPRLSFISDSEIQSEFSHHDQTISRINNGSFGSCPQSVISAQQSFQLQFLRQPDHFYFNTLKSSILHSRSI
IKSLVNARSVDEISLVDNATTAVAIVLQNYAWGFTEGRFNKGDVAVMLHYAYGAVKKSVQAYVTRAGGEVIEVQLPFPITSKEEIVSEFRKALERGKENG
KKKVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGCVDVDVRDIGADFYTSNLHKWFFCPPSIAFLYCRKRGEEGNGGDLHHPVVSHEY
GNGLAVESAWIGTRDYSAQLVVPAVLEFINRFEGGIDGIKERNHEKVVEMGEMLVKAWGTNLGSPPEMCGSMIMVGLPACLGISSESDSLKLRTHLREHF
QVEVPIYFRAPLDGEVGSVTGYARISHQVYNKVEDYYRFRDAVNQLISDGFTCASLSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26600 Pyridoxal phosphate (PLP)-depe... Potri.005G003000
[exp]
0 1
AT2G39220 PLP6, PLAIIB ,P... PATATIN-like protein 6 (.1) Potri.010G221700
[exp]
6.08 0.6768
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.009G054900
[exp]
12.64 0.6529
AT3G55550 Concanavalin A-like lectin pro... Potri.010G200600
[exp]
13.56 0.6596
AT4G13460 SET22, SDG22, S... SETDOMAIN GROUP 22, SU(VAR)3-9... Potri.010G064300
[exp]
19.97 0.6578
AT1G02630 Nucleoside transporter family ... Potri.018G130000
[exp]
30.39 0.6332
AT1G55550 P-loop containing nucleoside t... Potri.003G223800
[exp]
34.78 0.6427
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Potri.013G052200
[exp]
37.69 0.5656
AT5G15710 Galactose oxidase/kelch repeat... Potri.004G112400
[exp]
42.81 0.5731
Potri.010G076150
[exp]
52.82 0.6066
AT5G42785 unknown protein Potri.005G228800
[exp]
67.34 0.5929

Potri.005G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.