Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53700 202 / 2e-55 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 202 / 3e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 179 / 1e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 177 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 177 / 3e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G09900 171 / 2e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 172 / 9e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 168 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 171 / 3e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 167 / 1e-43 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G002800 [exp] 1247 / 0 AT5G64320 220 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 243 / 3e-70 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 181 / 3e-48 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 183 / 4e-48 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 181 / 1e-47 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 179 / 6e-47 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G045000 [exp] 175 / 2e-46 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 175 / 3e-46 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 174 / 1e-45 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039056 [exp] 218 / 2e-60 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 207 / 1e-56 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 206 / 2e-56 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 176 / 9e-46 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 169 / 3e-43 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 165 / 2e-42 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 163 / 2e-41 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 161 / 2e-41 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 162 / 4e-41 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 160 / 1e-40 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G003200.1 pacid=42804494 polypeptide=Potri.005G003200.1.p locus=Potri.005G003200 ID=Potri.005G003200.1.v4.1 annot-version=v4.1 ATGCTCTCTCCTTCAACATTCTTGAAGAGAATTCCCAAATGGGTCAATCTAAAAGCATTCATTTCTTCAGTATCTTGCACTAATACCATCCAAATTAACC CAGAAATCAATCAAAACACGCCAAACTTTCCTGATTTTGATGTAAAGATTCAATCTTTGAGGAATAAATTGTACCCTGATAACTTAATTAAGGTTTTGAA AAGCACCAGTGATGTTAACTCTGCTGTTAAGATATTCAAATGGGCTGCCCTTCAAAGAAAGTTTAACCACACTGCTGATACTTATTATTGGATAATTTTC AAGCTGGGTATGGCTGGCAATGTTGAGGAAATGGAGGGGTTTTGTCAAAATATGGTAAAAGAGAGGTGCACAGGTGAAGAAGATGTTCTTGTTTCATTGG TTGATGCTTTTGTTAGAAATTGTAGGCTTAATGAAGCAATGCGTGTTCTTTTTAATATGAATTTGGCTGGTATTAAGCCTTCAATTGATGTGTTTAATTT TGTTTTGGGTGCTCTTGTTGAAGAGAAGAGAGGGTTTCAAGATGTGGTTTTTGTTTATAAGGAGATGGTGAAAGCAGGAGTGGCACCTAGCATTGATACT TTGAATTATTTGCTGGAGGTTTTGTTTGAGACAGATAGGGTTGATTCTGCTTTGGATCAATATAGGAGAATAAACAAGAAAGGGTGCCGTCCTGATGGTA AGACTTTTGAGATAGTAATAAAAGGTCTCATCGCCAATGATAGAGTTGATGATTCAGTTTCCATTTTGCATGAGATGTTGGAACTCGGATGCCTGCCTGA ACTAAGTTTTTATAGAACTACAATACCTTTGTTTTGTAGGGAAGATAGACTGGAAGAGGGGATTAGGCTGTTCAGGAAGATGAAAGAATCTAATTTTACC CCGGATTCTTTTATTTATGGAGCTTTGATACAGTGTTTGTGCAAGCAGCTTAGATTGGATGAGGCAGTAAACCTTCTTGAAGAGATGATGGAAAGTCAGT TGGAAGGTGATAATAATGTTTTCGTGGATGTTGTAAATGGATTTTGTAAATTAGGGAAGATTAATGAAGCTGTTAAACTCTTGGAAGATAAACATGTGCT TGAAACTTCTCCACATAATGCATTGCTCAGATGTTGTTGTGATGCTGATAAATTTCTCATGGCTAAAGGTCTCCTTGAGAAGATGTCTGAGAGAAATATT GATGATTGCGATTCTTGGAACATTCTTATCAGATGGCTTTGTGAGAGGGAGGAAATGGTGAAAGCATACGAACTTCTAGGCAGAATGATTATATCTTCTT TGATTCCTGACTATGCCACATATTCTGCTCTTGTTGCTGGCAACTGTAGGTTAAGCAAGTATGAAGATGCTCTGCAGCTATTTCTTCAGCTTCATGCCAA GTGCTGGATTTTAGATCCTGCTTCTTACTCTGAGCTAATTGAAGGACTATGCAGGGGTGAAAAGTATCTAGAGGCTGTTAAAGTATTTTGCTACATGTCT GAGAACAGATGTTCTCTTCAGTCTTTGCCATTTATTATGCTTATCAAGGGTATTTGTGACATGGGAATGATTGGTGAAGCTGTCAGGCTACAATCGTTGG CTTATAACTCTGGTACTTCTTGTGTCAATGCTACATATAATTATGTAATGCTCAGATTGTCTAAATCAGAGCAGGGAAGACATGTGCTAGCCTTTCTCTC ACGAATGTTGGTTCAGGGTGGCAATCTTAATACAGAAGCATATTGCATTTTGATACAGAGCTTGATTGCACAAAATCGAATAAAGGATTGCTCTATGTTT CTCAATGTGATGATTAATAAGGGTTTAGTACCTGATTCAGACACATTATATAATCTACTGTCATGTTTGGCCAAGCATTCTCAGTTGTACTTGATTTCGG TTTCACTTGATAAACTTGCTTCTGACTGTGAAGTTCTAGATTCAGCCATGTATAACATACTTATTAATGGCATGTGGAAAGAGGGCAATAAAAATGATGC TCGTCGACTGTTAGACTTGATGTTGGAGAAGGGTTGGGTCCCAGATGCTATGACCCATGGGTTGTTGATTGGCTCTGCTGATATGGAGGAAAAGGGTGAG GGGATGTTGGCATATGTTGATCTTAGCACCAAAGATGGCGTTGGTGACATACTAGCTGAGGGATTGGGGGAAACATGA
AA sequence Show only first row Show all	>Potri.005G003200.1 pacid=42804494 polypeptide=Potri.005G003200.1.p locus=Potri.005G003200 ID=Potri.005G003200.1.v4.1 annot-version=v4.1 MLSPSTFLKRIPKWVNLKAFISSVSCTNTIQINPEINQNTPNFPDFDVKIQSLRNKLYPDNLIKVLKSTSDVNSAVKIFKWAALQRKFNHTADTYYWIIF KLGMAGNVEEMEGFCQNMVKERCTGEEDVLVSLVDAFVRNCRLNEAMRVLFNMNLAGIKPSIDVFNFVLGALVEEKRGFQDVVFVYKEMVKAGVAPSIDT LNYLLEVLFETDRVDSALDQYRRINKKGCRPDGKTFEIVIKGLIANDRVDDSVSILHEMLELGCLPELSFYRTTIPLFCREDRLEEGIRLFRKMKESNFT PDSFIYGALIQCLCKQLRLDEAVNLLEEMMESQLEGDNNVFVDVVNGFCKLGKINEAVKLLEDKHVLETSPHNALLRCCCDADKFLMAKGLLEKMSERNI DDCDSWNILIRWLCEREEMVKAYELLGRMIISSLIPDYATYSALVAGNCRLSKYEDALQLFLQLHAKCWILDPASYSELIEGLCRGEKYLEAVKVFCYMS ENRCSLQSLPFIMLIKGICDMGMIGEAVRLQSLAYNSGTSCVNATYNYVMLRLSKSEQGRHVLAFLSRMLVQGGNLNTEAYCILIQSLIAQNRIKDCSMF LNVMINKGLVPDSDTLYNLLSCLAKHSQLYLISVSLDKLASDCEVLDSAMYNILINGMWKEGNKNDARRLLDLMLEKGWVPDAMTHGLLIGSADMEEKGE GMLAYVDLSTKDGVGDILAEGLGET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.005G003200 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	8.12	0.7184
					Potri.006G104150 [exp]	8.12	0.7639
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Potri.003G123800 [exp]	19.51	0.6615
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.008G124700 [exp]	22.24	0.7630
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	23.23	0.7173
AT5G14990			unknown protein		Potri.010G222200 [exp]	31.11	0.7549
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Potri.004G045800 [exp]	34.20	0.7480
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	43.57	0.7274
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.001G401900 [exp]	61.19	0.6978
					Potri.014G093150 [exp]	62.94	0.7151

Compare expression of checked genes

Potri.005G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.