Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09450 611 / 0 AtHaspin Haspin-related gene, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003600 [exp] 685 / 0 AT1G09450 462 / 6e-158 Haspin-related gene, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031442 [exp] 639 / 0 AT1G09450 629 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1) Lus10001517 [exp] 635 / 0 AT1G09450 607 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF12330 [poplar] [flax] Haspin_kinase Haspin like kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G003400.3 pacid=42803298 polypeptide=Potri.005G003400.3.p locus=Potri.005G003400 ID=Potri.005G003400.3.v4.1 annot-version=v4.1 ATGCAACTCCCGCCCAGGCATCAACTCCAGCATTTCAAAACACTCTCTCTCCAAAGGATTTTTGTACTAATGATGGGTTCCAAAACAGGTGAAGGAAGTA GAGTTGATTTATGGTCAGAAATCATTGCTGAAGAAGAAGGAGGAGGAGGAAGACAATCACTTCAACAACAACAACAGCAACCCATTTACCAAAGGAGGAG AAGACAAAAAACACCCCAAAATCAAATAACCTCACAAGATGCCAACTTGAAACAGTTGGAATTGAAGGACAAGGATATTAGAGTGAGTTTTGGTGGCGGT GGTCGTGCCACTAAACGTGTCAGTTGGAATCGCTCACTTTCTACGAGAGGGAGGATAAGTATAGCTGTTGCTGCTTGTGTGGACAATCAGCCTCAACAAA AACAGGCTAGAAAAAGGGGAAAACCACCTGTTCCAAAAGGAAAAGCAGTGCAACCTCCCAATTTTGAGAAAGAAAAGCAATACTTTGAAGAGGTCGATGC CTTCGAGTTGCTGGAGGAGAGCCCATCTCCCAAAAGCTCTAGTACATGGGCCACTGGCAATGAAACTGATGCAGTTGTTATACCACATATGTCATCAAGA TTAGAGAAATGGCTAATTGCTAAGAAGTTAAATTATAGTTGTGAGCCTTCTAGTACACTGTCGAAGATATTAGAAACTCCAACCATGCCTCCCTTGGGAC CTATGAGTGGCAATGATTTCAACATTGTTGATGTGATAACTCCAGAAAAAGCTGTTTTTGAAACTAATTCGAAACTGCATTCTGTCCATAGCAGAATTAG ATCATATTTACCTAGTAAAGGTGTCCTTGAAAGGAATTCTCTTGCACAAAAGAGCAGTTCTATGTTTGTGGGCCATGAGGGTTGTGAAGACATTGAGGGT GCAGTTAAGAAACTGTCCTTAGCTTCAACATCTTCTTTATCAGATCATGACTATGTGGATCCAGTTACTGCGCTATTGGCAGTCTGTGGACAGTCAGTTC CATCAACATTGCTGGAAGTATTCTCCAAATACTGTGAACCAGAGAATATTGTCAAAGTCGGTGAAGGAACTTATGGAGAAGCATTTAAAGCTGGTAATAC TGTCTGTAAAATAGTTCCTATTGATGGGGACTTACTGGTAAATGGAGAAGTACAGAAGAGATCAGAAGAATTGCTCGAGGAGGTTATCCTTTCTCGAACT CTCAACAATCTCAGATCCCATGATGCTGATTTTGACAATTCTTGCACAACCTTCATTGAAACTCTAGACTTAAGAGTTTGCCAAGGTCCTTATGACCCTT CCTTGGTTAAAGCATGGGAATACTGGGATGAAAAACATGGTTCTGAAAATGATCATCCTAAGGAGTTTCCGGAGAAACAGTGCTATGTGGTGTTTGTGCT ACAACATGGCGGGAAAGACCTTGAAAGCTTTGTGCTCTCAAACTTTGATGAAGCACAGAGTTTATTGGTTCAGGTTACTGCTGGCTTAGCTGTTGCAGAA GCTGCATATGAATTTGAGCACCGGGACCTGCACTGGGGAAACATTCTTTTGCGTCGAAATGAATCTGCTACTGTGCAGTTTATCCTGGAGGGGAAGAAAA TGATTTTCAGAACTTCAGGATTATTGATATCAATAATTGATTTTACTCTTTCCAGAATTAACACAGGTCAAGATATACTCTTCCTGGACCTAACCTCGGA CCCTTATCTCTTTAAGGGTCCGAAAGGAGATAGACAGGCAGAAACATATAGGAAGATGAAAGAAGTAACTGAAGACTTCTGGGAAGGAAGCTTCCCCAAG ACAAACGTGTTGTGGTTGCTATACTTGGTGGACATACTGCTCCTGAAGAAATCTTTTGATCGCTCTTCAAAAAATGAGAGAGATATGCGCTCGTTCAAAA AGCGTCTCAGCAAGTATAATTCAGCTAAGGAAGCTATTGTTTCGGATCCTTTCTTCAGCAACTTGCTTGTTGTGTGA
AA sequence Show only first row Show all	>Potri.005G003400.3 pacid=42803298 polypeptide=Potri.005G003400.3.p locus=Potri.005G003400 ID=Potri.005G003400.3.v4.1 annot-version=v4.1 MQLPPRHQLQHFKTLSLQRIFVLMMGSKTGEGSRVDLWSEIIAEEEGGGGRQSLQQQQQQPIYQRRRRQKTPQNQITSQDANLKQLELKDKDIRVSFGGG GRATKRVSWNRSLSTRGRISIAVAACVDNQPQQKQARKRGKPPVPKGKAVQPPNFEKEKQYFEEVDAFELLEESPSPKSSSTWATGNETDAVVIPHMSSR LEKWLIAKKLNYSCEPSSTLSKILETPTMPPLGPMSGNDFNIVDVITPEKAVFETNSKLHSVHSRIRSYLPSKGVLERNSLAQKSSSMFVGHEGCEDIEG AVKKLSLASTSSLSDHDYVDPVTALLAVCGQSVPSTLLEVFSKYCEPENIVKVGEGTYGEAFKAGNTVCKIVPIDGDLLVNGEVQKRSEELLEEVILSRT LNNLRSHDADFDNSCTTFIETLDLRVCQGPYDPSLVKAWEYWDEKHGSENDHPKEFPEKQCYVVFVLQHGGKDLESFVLSNFDEAQSLLVQVTAGLAVAE AAYEFEHRDLHWGNILLRRNESATVQFILEGKKMIFRTSGLLISIIDFTLSRINTGQDILFLDLTSDPYLFKGPKGDRQAETYRKMKEVTEDFWEGSFPK TNVLWLLYLVDILLLKKSFDRSSKNERDMRSFKKRLSKYNSAKEAIVSDPFFSNLLVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	0	1
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	2.00	0.8411	Ptr4CL13
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	2.23	0.8388
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.010G208100 [exp]	9.48	0.7889
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	10.00	0.7693
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	10.34	0.8584
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	10.81	0.7946
AT5G20950			Glycosyl hydrolase family prot...		Potri.009G153900 [exp]	11.13	0.8538
AT2G36710			Pectin lyase-like superfamily ...		Potri.006G120100 [exp]	12.36	0.8087
AT2G30690			Protein of unknown function, D...		Potri.002G042500 [exp]	13.49	0.8127
AT5G24340			3'-5' exonuclease domain-conta...		Potri.015G009500 [exp]	29.89	0.6819

Compare expression of checked genes

Potri.005G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.