Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30933 145 / 9e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G09460 141 / 3e-37 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G29380 120 / 6e-30 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G05430 106 / 6e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 110 / 1e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G13600 102 / 2e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G35740 97 / 6e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G26830 105 / 7e-24 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 103 / 2e-23 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 103 / 3e-23 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003500 [exp] 478 / 3e-162 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 142 / 2e-38 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.005G202400 [exp] 133 / 4e-35 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.001G353400 [exp] 132 / 3e-34 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 130 / 1e-33 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 112 / 2e-28 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 111 / 2e-28 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.017G055700 [exp] 109 / 3e-27 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 108 / 3e-27 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031443 [exp] 162 / 9e-44 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10001516 [exp] 149 / 5e-39 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10007342 [exp] 138 / 1e-36 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 131 / 5e-34 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10004546 [exp] 127 / 3e-32 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 127 / 5e-32 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015259 [exp] 123 / 2e-31 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10025379 [exp] 119 / 1e-29 AT1G29380 140 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10023276 [exp] 107 / 9e-27 AT4G05430 146 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10038529 [exp] 108 / 2e-26 AT4G05430 146 / 9e-45 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.005G003500.2 pacid=42802305 polypeptide=Potri.005G003500.2.p locus=Potri.005G003500 ID=Potri.005G003500.2.v4.1 annot-version=v4.1 ATGATGGCCAAAGTAGCTTCAAAGGGGCTGTTCTTATTCTTCTTGTCTCTTCTCACTCTTAGCTCTTCAGGAACTTTTGTGGGTTTCTCCTACAATGCCA GAGGAATCACTTCAGCTGCTTCACTTGGCAGAATAGTATCATTTCTTGAGCTAAACAAGGTCTCTGCAAGTCATATTCGAGTTTTTGCTGCAGATCACAG GGTTTTGAGTACACTTTCCAACTTTAATGTGTCTGCCGATCTTTATTTAGATGACAGCTTGGTTGAGAAATTGACAAAGTCTAAACCATCTGCCATTTCT TGGCTTAAGGCCCAAATAGTGACCTTTCTGCCCCATGTGTACAGTAGCATCATTGTAAGTGGCAACAATGGCTTGTCAAAGCTTTTATCCGCCTTGAAAT CAATCCATTCTGTCCTGAGTAGTTTTCATGTTGACAATGAAGTTAAGGTCTCAGTAGCATTTTCTCTGTCATTCTTAGAAAATTTGAATAGAACACAAGA AAAAGATCTCCGTAGGATTTTGGGATTTATCAAGAGAACTACGTCTTTTGTCATTGTAGAAACCAGTCTTGATATGGATGTAGAACTGGGCATGAAAGAT TTGTTTATTCAATCAATGATCCAAAAAGTTGCAGTTGCCACTTCTCTACTTTCTCCCAATGATGCTCCCATAGTTATGATTATCAAGAGCCTTGTTATTC CTGGTGCAAAAGAAGTAGCTGAATTTGGAGATAGGGTTTCAAAATCTTTAGAAAACACTAAGATCAGAGGTCAGGTAGCTGGATTGTATGCAGAAGTATC TTCTGTAGAAGATTTCGCGGAAAAAGAGCTGGAGAGGGAACATGAACAAATCTTTCCTTCATCTCGAAGAGAAATCTTGAGAAACTTCAAAACTACTTTA CATGATGATATAATTAATCCACCTACAGTTTTTCCAACAAATCCTGGATCGACTCCACCTGTCGTCACTCTCCTGCCAGATACTCCAACACCAACAATAG TCACTGTCCCTGCTACCAATCCAGTCACTGTAACACCTACCAATCCTGTATCCACTCCATTACCTTTCCCCAACACCACACCTGTCAATGTCCCCCCTAC AAACCCTTCTGTCAATCCACCACCACCAATTACCAATCCAGTCACAACACCAGCACCTATTACAGTTCCAGGTGCACAACCTGTAAGTCCTGTGACAACA TATCCAGCCCCAGCAGGCAATGTTCCAGTCACAGCACCAGTGACAAATCCTGTGGCACCTCCTGCTACGACAAATGCTCCAGCAATTCCAGGACAGAGCT GGTGTGTTGCAAGGTCCGGAGTGATGGACACAGCACTTCAGTCAGCGTTAGATTATGCATGTGGAATGGGAGGTGCTGATTGTTCACAGATCCAGCAGGG TGGGAATTGTTACAATCCAAACTCTCTTCAAAACCATGCCTCGTATGCATTCAACAGCTATTATCAGAAGAATCCTGTGGCAACTAGCTGTGATTTCGGA GGGACTGCCACTACAGTTAATGTGAATCCAAGCACTGGTTCCTGCATTTATCCGTCATCATCATCATCATCATCATCATCCACTCCGTCATTGCCAGCGA CCACAACTTCACCTGCAAATCCAGCGACAACTTCACCTGCAAATCCAGCGACAACATCACCTGCAAATCCAACAACATCCCCACCGGCGATCGGTGTGCC AGGCGCCCCCCCATCAGTTTTGAACTCATCAACCAACCCTGCCTCAAGTTTCGGTTTCAATACTCCTCCTGCTCTCAACTCTTCAGCATCCAAGTCAGCT ACTTTGCAGCCATTTATTGGTTGTGCCATTTTGGTAACATCATTTGTTGCCAGAACAATCATTCTAGACAACTAG
AA sequence Show only first row Show all	>Potri.005G003500.2 pacid=42802305 polypeptide=Potri.005G003500.2.p locus=Potri.005G003500 ID=Potri.005G003500.2.v4.1 annot-version=v4.1 MMAKVASKGLFLFFLSLLTLSSSGTFVGFSYNARGITSAASLGRIVSFLELNKVSASHIRVFAADHRVLSTLSNFNVSADLYLDDSLVEKLTKSKPSAIS WLKAQIVTFLPHVYSSIIVSGNNGLSKLLSALKSIHSVLSSFHVDNEVKVSVAFSLSFLENLNRTQEKDLRRILGFIKRTTSFVIVETSLDMDVELGMKD LFIQSMIQKVAVATSLLSPNDAPIVMIIKSLVIPGAKEVAEFGDRVSKSLENTKIRGQVAGLYAEVSSVEDFAEKELEREHEQIFPSSRREILRNFKTTL HDDIINPPTVFPTNPGSTPPVVTLLPDTPTPTIVTVPATNPVTVTPTNPVSTPLPFPNTTPVNVPPTNPSVNPPPPITNPVTTPAPITVPGAQPVSPVTT YPAPAGNVPVTAPVTNPVAPPATTNAPAIPGQSWCVARSGVMDTALQSALDYACGMGGADCSQIQQGGNCYNPNSLQNHASYAFNSYYQKNPVATSCDFG GTATTVNVNPSTGSCIYPSSSSSSSSSTPSLPATTTSPANPATTSPANPATTSPANPTTSPPAIGVPGAPPSVLNSSTNPASSFGFNTPPALNSSASKSA TLQPFIGCAILVTSFVARTIILDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	3.74	0.8447
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	4.79	0.8497
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.014G036700 [exp]	12.96	0.7400
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.007G092100 [exp]	13.74	0.8279
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	16.49	0.7368
AT1G22030			unknown protein		Potri.005G170700 [exp]	17.74	0.7350
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	18.16	0.7695	Pt-PHB.1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	21.42	0.7712
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	23.36	0.7804	Pt-PGP1.1
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	25.29	0.7869	Pt-TMKL1.1

Compare expression of checked genes

Potri.005G003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.