Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26770 375 / 3e-130 unknown protein AT3G05830 323 / 8e-110 unknown protein AT1G09470 311 / 8e-105 unknown protein AT1G09483 110 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003400 [exp] 516 / 0 AT5G26770 374 / 1e-129 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001515 [exp] 431 / 6e-152 AT5G26770 410 / 8e-144 unknown protein Lus10031444 [exp] 431 / 9e-152 AT5G26770 417 / 7e-147 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G003600.2 pacid=42805102 polypeptide=Potri.005G003600.2.p locus=Potri.005G003600 ID=Potri.005G003600.2.v4.1 annot-version=v4.1 ATGTCAGTTTTGGAGAGATCATCGTCGACATCAACTCCTGTTAGAGAGATTGATCCCTTATTGAAGGATTTAAATGAGAAGAAGCTAAGTTTTAGGAAAA ATGTTGTTTCTTTGGCTGCTGAGTTAAAGGGAGTGCGTAACCGCCTTGCATCTCAAGAGCAATCATTTGCTAAAGAAACAGAAACTAGACAGGAAGCAGA AAATAAAGCAAAAATCATGGAAGAGGAGATTAGCAGATTGCAGGAGAGAATGGAAGAGAGAAATGGCCAGCTTCTGGCTTCAGCTTCTACTGCTGATAAG TACCTCACGGAGTTGGATCGTCTCAGATCACAACTTGCAGCCACCCAAGCAACTGCGGATGCAAGTGCTGCCTCAGCTCAGTCAGCACAGCTTCAATGTT TAGCACTTATAAAAGAATTGGATGCAAAGAATAGCTCGTTAAAAGAGCATGAAGAGCGTGTAACTAGGCTAGGAGAGCAACTAGATAACTTGCAGAAGGA TCTTCAAGCTAGGGAATCTTCCCAAAAGCAACTGAAAGATGAAGTTACGAGAATTGAGCATGATATTATGAAAGCCATTTCCCAGGCAGGAGACAGTAAA GATTGTGAACTGAGGAAATTATTAGATGAAGTTTCTCCTAAAAACTTTGAGAAGATGAATAAACTTTTGGTTGTTAAGGATGAAGAAATAACCAAACTGA AAGATGAAATAAGAGTTATGTCTGCTCACTGGAAGCTTAAAACCAAGGAATTAGAATCACAGTTAGAGAAACAGCGACGAGCTGATCAGGAATTGAAGAA GAGGGTGTTGAAGTTGGAATTCTGTCTTCAGGAAGCTCGTGCTCAGACACGGAAGCTCCAGAGGATGGGAGAGCGAAGGGATAAAGCTATTAAAGAACTC CGAGACCAGTTAGCAGCTAAGAAGCAGGCTATATCTGAAGCAAATAATGATAAGCAAAATTTCTGGGAGACATCTAGCTTCAAGGTTGTAGTTTCCATGT CAATGTTGATCTTGGTTGTTTTCTCCAAGCGATGA
AA sequence Show only first row Show all	>Potri.005G003600.2 pacid=42805102 polypeptide=Potri.005G003600.2.p locus=Potri.005G003600 ID=Potri.005G003600.2.v4.1 annot-version=v4.1 MSVLERSSSTSTPVREIDPLLKDLNEKKLSFRKNVVSLAAELKGVRNRLASQEQSFAKETETRQEAENKAKIMEEEISRLQERMEERNGQLLASASTADK YLTELDRLRSQLAATQATADASAASAQSAQLQCLALIKELDAKNSSLKEHEERVTRLGEQLDNLQKDLQARESSQKQLKDEVTRIEHDIMKAISQAGDSK DCELRKLLDEVSPKNFEKMNKLLVVKDEEITKLKDEIRVMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKEL RDQLAAKKQAISEANNDKQNFWETSSFKVVVSMSMLILVVFSKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26770			unknown protein		Potri.005G003600 [exp]	0	1
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	9.59	0.9264
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	10.95	0.9228
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	12.96	0.9119
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	14.56	0.9083
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	16.73	0.9000
AT5G25840			Protein of unknown function (D...		Potri.018G045600 [exp]	19.13	0.8993
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	28.00	0.8864
					Potri.004G140000 [exp]	28.28	0.8856
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	29.15	0.8888	HY5.1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	29.46	0.8979

Compare expression of checked genes

Potri.005G003600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.