Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 496 / 4e-165 C2H2ZnF RING/U-box superfamily protein (.1) AT2G47090 379 / 1e-120 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G004200 [exp] 944 / 0 AT3G62240 501 / 3e-166 RING/U-box superfamily protein (.1) Potri.002G189700 [exp] 566 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.014G114900 [exp] 554 / 0 AT3G62240 830 / 0.0 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038048 [exp] 478 / 5e-159 AT3G62240 714 / 0.0 RING/U-box superfamily protein (.1) Lus10010069 [exp] 426 / 8e-138 AT3G62240 810 / 0.0 RING/U-box superfamily protein (.1) Lus10004521 [exp] 414 / 1e-133 AT3G62240 763 / 0.0 RING/U-box superfamily protein (.1) Lus10009987 [exp] 0 / 1 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G004600.2 pacid=42803329 polypeptide=Potri.005G004650.1.p locus=Potri.005G004600 ID=Potri.005G004600.2.v4.1 annot-version=v4.1 ATGGATGATACCTGTGCTGTTTGTGCTGATGCCCTTGAATGGGTTGCTTATGGACCATGTCTCCATAAAGAAGTCTGCTCTACTTGCATAATTCGTCTTC GTTTCATCTGCAATGATTTTCATTGCTGCATTTGCAAATCAGAATCCAACACCATCTTTGACACTAAGGCATTAGGGGATTGTACGAGGATGATAAGTGA CTTCAAGGGTTTAGGTGGAGTTAATGGAAAAGAGGGTAAAGTAGGGGAGTGTTGGTATCATGAAGGGACAAAGGCTTATTTTGATGATTTTGATCATTAT AAGATGATTAAAGCTATGTGTAGGTTATCATGCAATGTTTGCAACAAGAAGGATGGAGGGTCAAAAGAGTTTAATAGCGTTGAGCAATTGAAGGGGCATT TGTTTCACAAGCATAGGCTGTTTATGTGTGGTCTGTGTTTGGAAGGTAGGAAGATATTTACAAGTGAGCAGAAGTTATATAATAGAGCACAATGGACTCA ACATGTGAGGACGGGGGACTCGGTGGTTGATGGTAGTGAAAGTGAAAGAGGTAGATTTACAGGACATCCTATGTGTGAGTTCTGTGAGAATCGTTTTTAT GGAGATAATGAGCTTTACTTGCATATGTCTACTGAGCATTTTACTTGCCACATATGCCAAAGGCAACATCCTGAACAATATGAATACTTCAACAAACATT TCTTATGTGAAGATAAGGTTTGCCTTGCAAAACAGTTTATTGTTTTTGCAATTGAATCTGAATTGAAGAGGCATAATACCATGGAACATGGAGGGTGCTT GTCTTGTTCTAAGCATAGTGCTGTACTTCAGATACCTACGAGTTTCTGGTTTCAGCAAATTAATGAACATTGTCGGCATGGTAGAAGTTATGGTAGTCAT TTGAATTCATCAAGCTATCAAATGAACTTGGCCATTGTAGATAGCCATCTGACAGCCAATGCTGAAAGGCCTTGTGATATTTTATCAAATGCCCAAACAG TTTCTACTCACAGAGAGGAGTGTGAAATTGATATAATTGTTAACCCTTTCGAGTCATTAGCCACCACAGATTCTGAGCCACCTTCAAGATATAATCATGT TTTAGGACAGAACTCTAGGAGTGTACCAATGGAAGAAACCTCCTTTCCTCCACTTCTGATGGCTCAAAGCAGCCGCCAACAGAGATCCAGAAATGTCCTT AATTCTTCCCGGGCTTTGCCAGCAGCAAACAGTCATCCTATCTCATTAGCTAGTTTTTCTTACCACTCAAGGCCCGTTTCAGATTCCGGGGTTCTATCTC CATCCAGTTCTCTGAGTTCATCCCAGAATTTTGCAAGTTCATCTAGGACTTCAAATAGTAACAGCAAGGTCAGCCAAGCTACTGTGGCTCCAAATCCTGT AGACAGAACCTCTCACAAATCTCTTTCCAGTGCTCCTTGTCTATCTACCGCTCAAGTGGATAATATGTCTAGTAGGGCCTCACCTTTGCTTAAGATTGAG TATGTTCAATCTTCTAATAAGGCTCTAGTGGAAAAAATTCGTGCTACATTGGAATTTAATGAGGAGAAATTCAGTGCATTTAAATTAATATCCACAGAGT ACCTCCGGGATTTAATTGATACTGCAGAGTATCTTGCCTACGTACATCAATTTGGCCTATCACATCTTGTCCTTGAGCTAGCTAGACTTTGTCCCAGTGC TGAGAAGCAAAGAGAGCTTGGTTCTGTTGAAAATGGATTGAGCATTGACAATGGTCATTCCAAAAGCAAGAAAAGTTCAAAGAAAGGCAAAGAGAAGTGT GATGGTAATGATAGTTTTAAGGTGGAGATCTTACCAAAGGAAGGGCATCATGGTGGAAAAGGCAAATCAAAGATTTTGGTCGACAAACAAACTAACTTAA ATTTGTCAATGGAGCCAAAGAGTGAAATTGTCGCTCAGCCAGATGGTGTCAGCTCAAAAAAGAATGTGGGGGCTGGGGGAGGAGGGAATAAACCTAAGAA AAAAACCTCAAAGTTCCTTAAGAACCCTGTCGGTGATACTTCCGCTGCCTCACTGCCCCATGTTGGTAATTCTGACGCTGATCCTGATGAAAAAGAAGAG AAAGCAGATGTAGACAGCGATATACCTGAACTGTTGCTGGTTCATGAAGTTTGGAGAAATGGGAGAGGCGGAAAGCTTGTTGCAATGACCCAGTAA
AA sequence Show only first row Show all	>Potri.005G004600.2 pacid=42803329 polypeptide=Potri.005G004650.1.p locus=Potri.005G004600 ID=Potri.005G004600.2.v4.1 annot-version=v4.1 MDDTCAVCADALEWVAYGPCLHKEVCSTCIIRLRFICNDFHCCICKSESNTIFDTKALGDCTRMISDFKGLGGVNGKEGKVGECWYHEGTKAYFDDFDHY KMIKAMCRLSCNVCNKKDGGSKEFNSVEQLKGHLFHKHRLFMCGLCLEGRKIFTSEQKLYNRAQWTQHVRTGDSVVDGSESERGRFTGHPMCEFCENRFY GDNELYLHMSTEHFTCHICQRQHPEQYEYFNKHFLCEDKVCLAKQFIVFAIESELKRHNTMEHGGCLSCSKHSAVLQIPTSFWFQQINEHCRHGRSYGSH LNSSSYQMNLAIVDSHLTANAERPCDILSNAQTVSTHREECEIDIIVNPFESLATTDSEPPSRYNHVLGQNSRSVPMEETSFPPLLMAQSSRQQRSRNVL NSSRALPAANSHPISLASFSYHSRPVSDSGVLSPSSSLSSSQNFASSSRTSNSNSKVSQATVAPNPVDRTSHKSLSSAPCLSTAQVDNMSSRASPLLKIE YVQSSNKALVEKIRATLEFNEEKFSAFKLISTEYLRDLIDTAEYLAYVHQFGLSHLVLELARLCPSAEKQRELGSVENGLSIDNGHSKSKKSSKKGKEKC DGNDSFKVEILPKEGHHGGKGKSKILVDKQTNLNLSMEPKSEIVAQPDGVSSKKNVGAGGGGNKPKKKTSKFLKNPVGDTSAASLPHVGNSDADPDEKEE KADVDSDIPELLLVHEVWRNGRGGKLVAMTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.005G004600 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	3.00	0.9021
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	5.91	0.8727
AT2G31130			unknown protein		Potri.004G055300 [exp]	7.74	0.8708
AT2G35790			unknown protein		Potri.008G042800 [exp]	9.38	0.8633
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.008G191400 [exp]	9.64	0.8187	ALA3.2
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	9.79	0.8528
AT5G25930			Protein kinase family protein ...		Potri.018G057100 [exp]	11.53	0.8703
AT4G33540			metallo-beta-lactamase family ...		Potri.008G085751 [exp]	12.40	0.8486
					Potri.006G219750 [exp]	13.07	0.8384
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	13.41	0.8384

Compare expression of checked genes

Potri.005G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.