Plant FIBer expression Database

Potri.005G004900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09430 796 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
AT1G60810 727 / 0 ACLA-2 ATP-citrate lyase A-2 (.1)
AT1G10670 725 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G004400
[exp]
834 / 0 AT1G09430 790 / 0.0 ATP-citrate lyase A-3 (.1)
Potri.008G188900
[exp]
763 / 0 AT1G60810 725 / 0.0 ATP-citrate lyase A-2 (.1)
Potri.010G042700
[exp]
734 / 0 AT1G10670 716 / 0.0 ATP-citrate lyase A-1 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013032
[exp]
752 / 0 AT1G60810 766 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030897
[exp]
741 / 0 AT1G60810 761 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030592
[exp]
699 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10029129
[exp]
617 / 0 AT1G60810 627 / 0.0 ATP-citrate lyase A-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0179 ATP-grasp PF08442 ATP-grasp_2 ATP-grasp domain
CL0506 Succ_CoA_synth PF16114 Citrate_bind ATP citrate lyase citrate-binding
Representative CDS sequence
>Potri.005G004900.5 pacid=42803423 polypeptide=Potri.005G004900.5.p locus=Potri.005G004900 ID=Potri.005G004900.5.v4.1 annot-version=v4.1
ATGGCTAGAAAGAAGATAAGAGAGTATGATTCTAAGAGACTTTTGAAAGAGCACTTGAAACGTCTCTCTGGTATTGATCTTCAAATCTGCTCTGCTCAGG
TGACAGAAGGTACAGATTTCACTGAGTTAACAAATAAAGAGCCATGGCTTTCATCTACAAAATTGGTTGTGAAGCCTGACATGCTATTTGGGAAGCGTGG
GAAGAGTGGTTTGGTTGCTTTGAATTTAGATCTAGCTCAAGTTGCTGAATTTGTGAAAGCACGCCTTGGTGCTGAGGTTGAGATGGGTGGCTGTAAGGCA
CCAATAACTACCTTCATTGTTGAACCATTTGTTCCACATGACCAAGAGTTTTACATCTCAATTGTCTCTGAAAGACTCGGCAGCACTATTAGCTTCTCAG
AATGTGGGGGTATTGAAATTGAGGAGAACTGGGATAAGGTTAAAACCATTTTCCTCCCAACTGAAAAACCAATGACACTGGAAGCATGTGCTCCATTGAT
TGCTACACTTCCTTTGGAGATTCGAGGAAAAATCGGTGATTTCATCATCGGTGTCTTTTCTGTATTTCAAGATCTGGACTTCAGTTTTCTAGAAATGAAT
CCATTTACACTGGTGAATGGGGAACCATATCCACTGGATATGAGAGGAGAATTGGACGACACTGCTGCTTTCAAGAACTTCAAGAAATGGGGTAATGTAG
AGTTTCCTCTGCCTTTTGGAAGAGTTCTGAGTTCTACCGAAAGCTTCATTCATTCTCTGGATGAAAAGACAAGTTCATCTTTGAAATTCACTGTTTTGAA
TCCAAAGGGACGTATCTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTTATATATGCTGATACTGTTGGAGATTTGGGTTATGCATCAGAGCTTGGCAAC
TATGCAGAGTATAGTGGAGCTCCAAATGAGGACGAGGTCTTGCAATATGCAAGAGTTGTCATTGATTGTGCCACTTCTGACCCTGATGGTCGCAAAAGAG
CCCTTCTTATTGGAGGAGGCATCGCTAACTTCACCGATGTTGCTGCTACTTTCAATGGTATTATAAGAGCACTGAGAGAGAAGGAATCCAAGTTAAAGGC
TGCAAGAATGCACATCTATGTTCGAAGAGGTGGTCCAAACTATCAGACTGGTTTGGCCAAGATGCGCACTCTAGGAGAGGAACTGGGAGTACCTCTTGAG
GTTTATGGGCCAGAGGCCACAATGACAGGCATCTGCAAGCAAGCCATTGATTGCATCATGTCTACGGCATAG
AA sequence
>Potri.005G004900.5 pacid=42803423 polypeptide=Potri.005G004900.5.p locus=Potri.005G004900 ID=Potri.005G004900.5.v4.1 annot-version=v4.1
MARKKIREYDSKRLLKEHLKRLSGIDLQICSAQVTEGTDFTELTNKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKARLGAEVEMGGCKA
PITTFIVEPFVPHDQEFYISIVSERLGSTISFSECGGIEIEENWDKVKTIFLPTEKPMTLEACAPLIATLPLEIRGKIGDFIIGVFSVFQDLDFSFLEMN
PFTLVNGEPYPLDMRGELDDTAAFKNFKKWGNVEFPLPFGRVLSSTESFIHSLDEKTSSSLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
YAEYSGAPNEDEVLQYARVVIDCATSDPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIYVRRGGPNYQTGLAKMRTLGEELGVPLE
VYGPEATMTGICKQAIDCIMSTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09430 ACLA-3 ATP-citrate lyase A-3 (.1) Potri.005G004900
[exp]
0 1
AT2G20780 AtPLT4 Major facilitator superfamily ... Potri.004G039100
[exp]
1.00 0.9381
AT4G15830 ARM repeat superfamily protein... Potri.008G221900
[exp]
2.44 0.9273
AT3G58460 ATRBL15 RHOMBOID-like protein 15 (.1.2... Potri.006G197900
[exp]
2.82 0.9328
AT5G16590 LRR1 Leucine rich repeat protein 1,... Potri.017G130600
[exp]
3.16 0.9262
AT3G58600 Adaptin ear-binding coat-assoc... Potri.013G117900
[exp]
4.00 0.9272
AT1G06890 nodulin MtN21 /EamA-like trans... Potri.013G154800
[exp]
4.00 0.9205
AT1G17030 unknown protein Potri.004G062000
[exp]
6.00 0.9188
AT1G48880 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 ... Potri.002G071900
[exp]
7.34 0.9243
AT3G50760 GATL2 galacturonosyltransferase-like... Potri.007G031700
[exp]
9.89 0.9104
AT3G15580 APG8H, ATG8I AUTOPHAGY 8I, AUTOPHAGY 8H, Ub... Potri.008G099400
[exp]
11.18 0.9013

Potri.005G004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.